View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_106 (Length: 290)
Name: NF8889_low_106
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_106 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 10338338 - 10338062
Alignment:
| Q |
14 |
agatgagaaatattcaagagcagttgaagcaggaccataatagataggacacccttcagatagcaacacaaccttatcaaacatatagtagagtctactt |
113 |
Q |
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| T |
10338338 |
agatgagaaatattcaagagcagttgaagcaggaccataatagataggacacccttcagatagcaacacaaccttatcaaacatatagtagagtctactt |
10338239 |
T |
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| Q |
114 |
gaaggttgatgaatggttgtaacaacagttctaccaccactagcaagttttttgatagtgtttaagattctcaaagcagtggtagaatccaaaccagaag |
213 |
Q |
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| T |
10338238 |
gaaggttgatgaatggttgtaacaacagttctaccaccactagcaagttttttgatagtgtttaagattctcaaagcagtggtagaatccaaaccagaag |
10338139 |
T |
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| Q |
214 |
taggttcatcaagcaacaaacggcttggatttataagcatttcttgtcctatactcactctccttttctcaccacct |
290 |
Q |
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| T |
10338138 |
taggttcatcaagcaacaaaaggcttggatttataagcatttcttgtcctatactcactctccttttctcaccacct |
10338062 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 33718674 - 33718601
Alignment:
| Q |
195 |
gtagaatccaaaccagaagtaggttcatcaagcaacaaacggcttggatttataagcatttcttgtcctatact |
268 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| || ||||||||||||| ||||||||| ||||| |
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| T |
33718674 |
gtagaatccaaaccagaagttggttcatcaagaaacaacaaactaggatttataagcaattcttgtccaatact |
33718601 |
T |
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