View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_111 (Length: 286)
Name: NF8889_low_111
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_111 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 36952575 - 36952854
Alignment:
| Q |
1 |
gcggccgagtacatgatgtccatttgtggtgactgtgctctaaaggacatatcttcacctggaaaaagtggcagcatattctttatttctcaagatgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36952575 |
gcggccgagtacatgatgtccatttgtggtgactgtgctctaaaggacatatcttcacctggaaaaagtggcagcatattctttatttctcaagatgata |
36952674 |
T |
|
| Q |
101 |
aatttgtgatcaagacactnnnnnnntatgagctaaaggtttgtagtcacctcttttgcttgatggaccatattaactttttaattaagttattttgatt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36952675 |
aatttgtgatcaagacactaaaaaaatatgagctaaaggtttgtagtcacctcttttgcttgatggaccatattaactttttaattaagttattttgatt |
36952774 |
T |
|
| Q |
201 |
tgaattcatcaaatacacgaatcttgacttcgtaagtacttaatcacgtgcatacattcctcttgtcacaggttctgctc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
36952775 |
tgaattcatcaaatacacgaatcttgacttcgtaagtacttaatcacgtgcatacattcctcttgttataggttctgctc |
36952854 |
T |
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