View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_113 (Length: 284)

Name: NF8889_low_113
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_113
NF8889_low_113
[»] chr8 (3 HSPs)
chr8 (1-275)||(7850683-7850957)
chr8 (24-114)||(18959372-18959462)
chr8 (138-232)||(40611706-40611800)
[»] chr3 (4 HSPs)
chr3 (24-264)||(607704-607944)
chr3 (3-274)||(6577979-6578248)
chr3 (22-232)||(20543504-20543713)
chr3 (153-250)||(42969969-42970066)
[»] chr7 (2 HSPs)
chr7 (24-124)||(46432437-46432538)
chr7 (153-232)||(46432542-46432621)
[»] chr6 (1 HSPs)
chr6 (24-264)||(29943634-29943874)
[»] chr2 (1 HSPs)
chr2 (24-264)||(10782767-10783007)
[»] scaffold0025 (1 HSPs)
scaffold0025 (24-244)||(60156-60376)
[»] scaffold0384 (1 HSPs)
scaffold0384 (197-271)||(3028-3102)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 7850683 - 7850957
Alignment:
Q  1 tgacaattatctttttctctatgggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7850683 tgacaattatctttttctctatgggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaactt 7850782  T
Q  101 ctttctatgaacatctaggatatgtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtg 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7850783 ctttctatgaacatctgggatatgtacatgagcaatacatccgaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcaggagtg 7850882  T
Q  201 atatcttttactgacaaagtaggacttctattcatcacataggtagcccaattaactacttcagaccagaataat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7850883 atatcttttactgacaaagtaggacttctattcatcacataggtagcccaattaactgcttcaggccagaataat 7850957  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 18959462 - 18959372
Alignment:
Q  24 ggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttctttctatgaacat 114  Q
    ||||||||||||||||| ||||| ||||||||||| | |||| | |||||||| ||| ||||||| | ||||| ||| |||||||| ||||    
T  18959462 ggatcataaagcttatatgctttagattcttcactcataccatgatgaacacactttatactcttattatccagcttttttctatgcacat 18959372  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 40611706 - 40611800
Alignment:
Q  138 catccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtaggacttctatt 232  Q
    |||||||| ||||| |||||||  ||||  ||||||  |||||||||||| |||||  |||| |||||||| |||||||| ||| | ||||||||    
T  40611706 catccaaaaactctaaagtgttgaactgtaggtttcacaccactccatgcctcctccggagtcatatctttgactgacaatgtatggcttctatt 40611800  T

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Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 607944 - 607704
Alignment:
Q  24 ggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttctttctatgaacatctaggatat 123  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||  |  | || | ||||| ||| || |||||| ||||| | ||||    
T  607944 ggatcataaagcttataagctttagattcctcacttacaccaagatgaacacacttaatggttttattatccagctttttcctatgagcatctggaatat 607845  T
Q  124 gtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtagg 223  Q
    | |||| ||| || |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||| ||||| | ||| ||    
T  607844 gcacataagctatgcatccaaacactctaaagtgttttactgagggcttcttatcactccatgcttcttcaggagtgatatctttaactgaaagagtggg 607745  T
Q  224 acttctattcatcacataggtagcccaattaactacttcag 264  Q
    ||||||||||| |||||| |||||||| |||||| ||||||    
T  607744 acttctattcaacacataagtagcccatttaactgcttcag 607704  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 274
Target Start/End: Original strand, 6577979 - 6578248
Alignment:
Q  3 acaattatctttttctctatgggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttct 102  Q
    |||||||||||||  || |  ||||||||||||||||||||||| ||||| ||||| |  || |  | |||||  ||| | ||||||| ||||| ||| |    
T  6577979 acaattatcttttcttcaactggatcataaagcttataagctttagattcctcactcatccctaaataaacac--tttatgctcttgtgatccagctttt 6578076  T
Q  103 ttctatgaacatctaggatatgtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgat 202  Q
    |||||||||||||| | || || |||| |   || |||||||||||||| ||||||||||||||||| |||||| |||||||| |||| ||| |||||||    
T  6578077 ttctatgaacatctggaatgtgcacataaaatatgcatccaaacactctaaagtgttttactgagggcttcttatcactccattcttcttcaggagtgat 6578176  T
Q  203 atcttttactgacaaagtaggacttctattcatcacataggtagcccaattaactacttcagaccagaataa 274  Q
    ||| || |||||||||||| ||||| | || | ||||||||| ||||| |||||| |||||| ||| |||||    
T  6578177 atccttaactgacaaagtaagacttttgtttaacacataggtggcccatttaactgcttcaggccacaataa 6578248  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 20543713 - 20543504
Alignment:
Q  22 tgggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttctttctatgaacatctaggat 121  Q
    |||| ||||| | |||||||||||| ||||||||||| | ||||||  ||| |||| |  |||| |||||||| | ||||||||| ||||  ||| | ||    
T  20543713 tggggtcatacaacttataagcttttgattcttcactcaaaccaagtagaatacatatggtacttttgtcatctagcttctttctctgaatgtctcgtat 20543614  T
Q  122 atgtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagta 221  Q
    |||   ||  | ||| |||||||| ||||| |||||||  ||||  ||||||  |||||||||||||||||| | ||| |||||||| |||||||| |||    
T  20543613 atgagtataggaaatgcatccaaaaactctaaagtgttgaactgtaggtttcacaccactccatgcttcctc-taagttatatctttgactgacaatgta 20543515  T
Q  222 ggacttctatt 232  Q
    || ||||||||    
T  20543514 gggcttctatt 20543504  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 42970066 - 42969969
Alignment:
Q  153 aagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtaggacttctattcatcacataggtagccca 250  Q
    |||||||| ||||| || ||| || ||||||||||||||||  ||||||||||||| ||||| || || |||||||| ||||  |||||||| |||||    
T  42970066 aagtgtttcactgaaggcttcctatcactccatgcttcctctagagtgatatctttgactgataatgttggacttctgttcagtacataggttgccca 42969969  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 46432437 - 46432538
Alignment:
Q  24 ggatcataaagcttataagctttggattcttcactgacaccaaggtgaacaca-ttttttactcttgtcatccaacttctttctatgaacatctaggata 122  Q
    |||||||||||||| |||||||| |||||||||||  ||||||  |||||||| |||||||||||| |||||||||||| || | ||||||||| |||||    
T  46432437 ggatcataaagcttgtaagctttagattcttcacttgcaccaatatgaacacatttttttactcttatcatccaacttcattatgtgaacatctgggata 46432536  T
Q  123 tg 124  Q
    ||    
T  46432537 tg 46432538  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 46432542 - 46432621
Alignment:
Q  153 aagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtaggacttctatt 232  Q
    |||||||||| ||||| ||||||| ||||||||||||||| | |||||| |||||| ||||||| |||||||||||||||    
T  46432542 aagtgttttattgaggctttcttatcactccatgcttccttaggagtgacatctttgactgacatagtaggacttctatt 46432621  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 264
Target Start/End: Original strand, 29943634 - 29943874
Alignment:
Q  24 ggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttctttctatgaacatctaggatat 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||    ||||||||| | ||  ||  ||||| ||| |||||||  |||||| | | ||    
T  29943634 ggatcatagagcttataagctttggattcttcactgacaccaagtaagacacattttgtgcttctgctatccagcttttttctattcacatctggaacat 29943733  T
Q  124 gtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtagg 223  Q
    | |||   || |  || ||||||||||| |||||||| |||| ||||||  || |||| ||||| || ||  |||| || | ||| ||||| | ||| ||    
T  29943734 gaacaaatgctaagcaaccaaacactctaaagtgtttcactgtgggtttgatatcacttcatgcctcttctggagtaatgtttttgactgatagagttgg 29943833  T
Q  224 acttctattcatcacataggtagcccaattaactacttcag 264  Q
    |||| | |||||||||||||| ||||| || ||| ||||||    
T  29943834 acttttgttcatcacataggttgcccatttgactgcttcag 29943874  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 264
Target Start/End: Original strand, 10782767 - 10783007
Alignment:
Q  24 ggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttctttctatgaacatctaggatat 123  Q
    |||||||| || ||||| ||||||||||||||||||||||| ||   |||||||||| | ||| | | ||||| |||||||||||  ||||   ||| ||    
T  10782767 ggatcatagagtttataggctttggattcttcactgacacccagtaaaacacattttgtgctcctattatccagcttctttctattcacattagggacat 10782866  T
Q  124 gtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtagg 223  Q
    | |||   || |  || ||||| || ||||||||||| |||| |||||||  ||||||||||||||| ||  ||||||||| ||| ||||| | ||| ||    
T  10782867 gaacaaatgctaagcaaccaaagaccctgaagtgtttcactgtgggtttcacaccactccatgcttcttctggagtgatatatttgactgatagagttgg 10782966  T
Q  224 acttctattcatcacataggtagcccaattaactacttcag 264  Q
    |||| | |||| || ||| |  ||||| |||||| ||||||    
T  10782967 acttatgttcaacatataagctgcccatttaactgcttcag 10783007  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 60156 - 60376
Alignment:
Q  24 ggatcataaagcttataagctttggattcttcactgacaccaaggtgaacacattttttactcttgtcatccaacttctttctatgaacatctaggatat 123  Q
    |||||||| || ||||| ||||||||||||||||||||||||||   |||||||||| | ||  ||  |||||  ||||||||||  |||| | | | ||    
T  60156 ggatcatatagtttataggctttggattcttcactgacaccaagtaaaacacattttgtgcttctgctatccagtttctttctattcacatatggaacat 60255  T
Q  124 gtacatgagcaatacatccaaacactctgaagtgttttactgagggtttcttaccactccatgcttcctcatgagtgatatcttttactgacaaagtagg 223  Q
    | |||   || |  || ||||| ||||||||||||||||||| ||||||| || |||| |||||||| ||  |||| ||||  || ||||| |  || ||    
T  60256 gaacaaatgctaagcaaccaaaaactctgaagtgttttactgtgggtttcatatcacttcatgcttcttctggagtaatattgttgactgatagcgttgg 60355  T
Q  224 acttctattcatcacataggt 244  Q
    |||||| ||||| ||||||||    
T  60356 acttctgttcattacataggt 60376  T

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Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 3102 - 3028
Alignment:
Q  197 agtgatatcttttactgacaaagtaggacttctattcatcacataggtagcccaattaactacttcagaccagaa 271  Q
    ||||||||| || ||||||| ||||||||||||||| | |||||||||  |||| |||||| |||||| ||||||    
T  3102 agtgatatccttaactgacagagtaggacttctatttaacacataggtgacccatttaactgcttcaggccagaa 3028  T

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