View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_115 (Length: 283)
Name: NF8889_low_115
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 15963442 - 15963198
Alignment:
| Q |
32 |
catagccatacgttttaccaaactattaattaacaacaacaaaattgtggaaacaaaatggtatattttaatgctttatgcagcatataattaaatagat |
131 |
Q |
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| T |
15963442 |
catagccatgcgtgttaccaaactattaattaacaacaacacaattgtggaaacaaaatggtatattttaatgctttatgcagcatataattaaatagat |
15963343 |
T |
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| Q |
132 |
gctaagttgtcttgtctccatataaagcataaatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttaggcat |
231 |
Q |
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| T |
15963342 |
gctaagttgtcttgtctccatataaagcataaatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttaggcat |
15963243 |
T |
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| Q |
232 |
aaataatacaaaatgaagagaacaaatgttcattaatctctgctt |
276 |
Q |
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| T |
15963242 |
aaataatacaaaatgaagagaacaaatgttcattaatctgtgctt |
15963198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 20373308 - 20373401
Alignment:
| Q |
134 |
taagttgtcttgtctccatataaagcataaatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttagg |
228 |
Q |
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| T |
20373308 |
taagttattttgtctccatatatagcagaa-tccgagatgaatcaagaagaagattaagaaaactaaattgaaaccaaataacattctatctagg |
20373401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 660299 - 660381
Alignment:
| Q |
157 |
agcataaatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttaggcataaataata |
239 |
Q |
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| T |
660299 |
agcatgaatccaagataaatgaaaaactagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataata |
660381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 13401058 - 13401006
Alignment:
| Q |
176 |
ttaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttagg |
228 |
Q |
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| T |
13401058 |
ttaagaacgagtttaagaaaactaaattgaaaccaaataacattctatctagg |
13401006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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