View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_117 (Length: 278)
Name: NF8889_low_117
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_117 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 33047114 - 33046846
Alignment:
| Q |
1 |
tttcgaacagaatttgaaccaggaaggatggcagcagccggtgcactggacaaattaagacctgaaacgttgacagaagcgggagtagcatggttgccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33047114 |
tttcgaacagaatttgaaccaggaaggatggcagcagctggtgcactggacaaattaagacctgaaacgttgacagaagcaggagtagcatggttgccag |
33047015 |
T |
|
| Q |
101 |
taggtgttgaagtagaagagctaattccaccacttttaggaggtggggtttttgccacaatgtcagaattgctatcctgagacgctgtctcatcagcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33047014 |
taggtgttgaagtagaagagctaattccaccacttttaggaggtggggtttttgccacaatgtcagaattgctatcctgagacgctgtctcatcagcttg |
33046915 |
T |
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| Q |
201 |
ctcctggacagaagcattccaattattaaaatcagtttcccagaaagaggaacaacaatgatgtccatct |
270 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33046914 |
ctcctggacagaagcattccaattatt-aaatcagtttcccagaaagaggaacaacaatgatgtccatct |
33046846 |
T |
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