View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_119 (Length: 276)

Name: NF8889_low_119
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_119
NF8889_low_119
[»] chr4 (13 HSPs)
chr4 (134-260)||(36909527-36909653)
chr4 (16-132)||(36908338-36908454)
chr4 (148-252)||(36636931-36637035)
chr4 (149-260)||(38863131-38863242)
chr4 (134-261)||(36668585-36668712)
chr4 (149-252)||(35968309-35968412)
chr4 (134-230)||(36656427-36656523)
chr4 (52-132)||(37734961-37735040)
chr4 (21-121)||(45273404-45273503)
chr4 (16-77)||(36908443-36908504)
chr4 (211-257)||(18364263-18364309)
chr4 (211-257)||(36598616-36598662)
chr4 (144-230)||(55967037-55967123)
[»] chr1 (8 HSPs)
chr1 (16-132)||(22771308-22771424)
chr1 (16-132)||(23077102-23077218)
chr1 (16-132)||(44557964-44558079)
chr1 (16-132)||(5207621-5207736)
chr1 (16-131)||(24855083-24855197)
chr1 (32-77)||(24855187-24855232)
chr1 (19-127)||(11330967-11331074)
chr1 (19-127)||(11488988-11489095)
[»] chr2 (3 HSPs)
chr2 (16-132)||(42060893-42061007)
chr2 (16-132)||(19064224-19064339)
chr2 (32-120)||(27002455-27002542)
[»] chr5 (5 HSPs)
chr5 (16-127)||(9035312-9035422)
chr5 (16-131)||(24229435-24229549)
chr5 (149-260)||(19658319-19658430)
chr5 (149-260)||(19675158-19675269)
chr5 (27-77)||(24229395-24229445)
[»] chr3 (5 HSPs)
chr3 (35-132)||(34816613-34816709)
chr3 (16-132)||(51460090-51460205)
chr3 (52-119)||(42676919-42676985)
chr3 (32-78)||(36226887-36226933)
chr3 (17-78)||(34816697-34816758)
[»] chr8 (2 HSPs)
chr8 (16-132)||(25487475-25487589)
chr8 (16-77)||(8850597-8850658)
[»] chr6 (1 HSPs)
chr6 (17-120)||(34707344-34707446)
[»] chr7 (2 HSPs)
chr7 (32-132)||(44183944-44184044)
chr7 (17-77)||(44184033-44184093)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 36909527 - 36909653
Alignment:
Q  134 tacctgatgctgttatccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36909527 tacctgatgctgttatccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatggggacatctctggaagcg 36909626  T
Q  234 aattccaactcttatgttgcattcttc 260  Q
    |||||||||||||||||| ||||||||    
T  36909627 aattccaactcttatgttacattcttc 36909653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 36908338 - 36908454
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36908338 tgtggtgggtcgacattccaaaactattttgcacaaacaaccaattaaaacattctgaattgctatgtttggcccacgttaattaaaaaacattaattga 36908437  T
Q  116 tgtggcaattcagaatg 132  Q
    |||| ||||||||||||    
T  36908438 tgtgacaattcagaatg 36908454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 36637035 - 36636931
Alignment:
Q  148 atccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcgaattccaactctta 247  Q
    |||||||||||||| ||||| ||||||||||||||||  ||| ||||||||||||| || |||||||||  |||||||||||| || |||||||||||||    
T  36637035 atccttcacattttgtcatttttgaataccaaacatgttgtcagaacttgtgttttgtctaagagatggagacatctctggaaacgtattccaactctta 36636936  T
Q  248 tgttg 252  Q
    |||||    
T  36636935 tgttg 36636931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 38863242 - 38863131
Alignment:
Q  149 tccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcgaattccaactcttat 248  Q
    ||||| ||||||| ||||  |||||||||||||||||| |  ||||||||||||| |||||||||||| ||||||||| ||| || |||||| |||||||    
T  38863242 tcctttacattttgtcatcgttgaataccaaacatgccattcgaacttgtgttttgtccaagagatggaaacatctctcgaaacgtattccatctcttat 38863143  T
Q  249 gttgcattcttc 260  Q
     |||||||||||    
T  38863142 attgcattcttc 38863131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 36668712 - 36668585
Alignment:
Q  134 tacctgatgctgttatccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcg 233  Q
    ||||||| | |||||||||||| ||||| ||||| ||| |||| ||||| |  ||  ||||||||||||| || ||||||||||||||||||||||| ||    
T  36668712 tacctgacggtgttatccttcaaattttgtcattattggatacaaaacaggttgtgagaacttgtgttttgtcaaagagatgggaacatctctggaaacg 36668613  T
Q  234 aattccaactcttatgttgcattcttct 261  Q
     ||| |||| ||||| ||||||||||||    
T  36668612 tatttcaacccttatattgcattcttct 36668585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 35968309 - 35968412
Alignment:
Q  149 tccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcgaattccaactcttat 248  Q
    ||||||||||||| ||||| ||| |||| ||||| | |||   |||||| ||||| ||||| |||||||||||||||||||| || ||| ||||||||||    
T  35968309 tccttcacattttgtcattattggatacaaaacaggtcgttcaaacttgcgttttgtccaaaagatgggaacatctctggaaacgtatttcaactcttat 35968408  T
Q  249 gttg 252  Q
    ||||    
T  35968409 gttg 35968412  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 36656523 - 36656427
Alignment:
Q  134 tacctgatgctgttatccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaa 230  Q
    |||||||||||  | | ||| ||||||||||||| ||| | |||||||| || ||| ||||||| || || |||||||||||| |||||||||||||    
T  36656523 tacctgatgctcctcttctttacattttatcatttttgtacaccaaacacgctgtccgaacttgcgtgttgtccaagagatggaaacatctctggaa 36656427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 37734961 - 37735040
Alignment:
Q  52 acaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgtggcaattcagaatg 132  Q
    |||||||||||||| ||||| |||||| |  |||||||||| | |||| |||| |||||||||||||| ||||||||||||    
T  37734961 acaaccaatcaaaacattctgaattgccacatttggcccacataaatt-aaaatcattaattgatgtgtcaattcagaatg 37735040  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 45273503 - 45273404
Alignment:
Q  21 tgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgtgg 120  Q
    ||||| |||| | |||||| |||||||||| |||||||||||||| ||||| |||||||  |||| ||| || | |||| |||| |||||||||||||||    
T  45273503 tgggttgacaattcaaaacagttttgcatatacaaccaatcaaaacattctgaattgctgcgtttagcctacataaatt-aaaatcattaattgatgtgg 45273405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 36908504 - 36908443
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattg 77  Q
    |||||||  |||||| ||||||||||||||||| |||||| ||||||||| ||||| |||||    
T  36908504 tgtggtgaatcgacagtccaaaactgttttgcacaaacaatcaatcaaaacattctgaattg 36908443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 18364263 - 18364309
Alignment:
Q  211 agatgggaacatctctggaagcgaattccaactcttatgttgcattc 257  Q
    |||||| ||||||| ||||| || |||||||||||||||||||||||    
T  18364263 agatggaaacatctttggaaacgcattccaactcttatgttgcattc 18364309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 36598662 - 36598616
Alignment:
Q  211 agatgggaacatctctggaagcgaattccaactcttatgttgcattc 257  Q
    |||||| ||||||| ||||| || |||||||||||||||||||||||    
T  36598662 agatggaaacatctttggaaacgcattccaactcttatgttgcattc 36598616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 55967123 - 55967037
Alignment:
Q  144 tgttatccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaa 230  Q
    |||| ||||||||||||||||||| ||||| ||||| |||| | |  ||||||||||||| ||||  ||||||  | ||||||||||    
T  55967123 tgttctccttcacattttatcatttttgaagaccaagcatgtcattagaacttgtgttttgtccacaagatggagatatctctggaa 55967037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 22771308 - 22771424
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||| |||||||||    
T  22771308 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaacattctgaattgccatgtttgacccacgttaattaaaaaatattaattga 22771407  T
Q  116 tgtggcaattcagaatg 132  Q
    |||||||||||||||||    
T  22771408 tgtggcaattcagaatg 22771424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 23077102 - 23077218
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||| |||||||||    
T  23077102 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaacattctgaattgccatgtttgacccacgttaattaaaaaatattaattga 23077201  T
Q  116 tgtggcaattcagaatg 132  Q
    |||||||||||||||||    
T  23077202 tgtggcaattcagaatg 23077218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 44557964 - 44558079
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    ||||||||||||| | ||||||| ||||||||| |||||| ||||||||| ||| | |||||  |||||| | ||||||||||| ||||| |||||||||    
T  44557964 tgtggtgggtcgataatccaaaattgttttgcacaaacaatcaatcaaaacattatgaattgtcatgtttagtccacgttaatt-aaaaatattaattga 44558062  T
Q  116 tgtggcaattcagaatg 132  Q
    |||| | ||| ||||||    
T  44558063 tgtgacgatttagaatg 44558079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 5207736 - 5207621
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||| |||| |||||||  |||||| | | |||||||||||||| ||||| |||||  |  |||||| ||| | ||||||||  ||||||||||    
T  5207736 tgtggtgggttgacagtccaaaatagttttgtacatacaaccaatcaaaacattctgaattgtcacatttggctcacataaattaaaat-cattaattga 5207638  T
Q  116 tgtggcaattcagaatg 132  Q
    |||||||||||||||||    
T  5207637 tgtggcaattcagaatg 5207621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 24855083 - 24855197
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||| |||| | ||| || |||||||| | |||||||||||||| ||||| |||||| ||| |||| ||||  ||| | |||| ||||||||||    
T  24855083 tgtggtgggttgacagtgcaagacagttttgcacacacaaccaatcaaaacattctgaattgccatggttggtccac-ataagttaaaatcattaattga 24855181  T
Q  116 tgtggcaattcagaat 131  Q
    |||| ||||| |||||    
T  24855182 tgtgacaatttagaat 24855197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 24855232 - 24855187
Alignment:
Q  32 tccaaaactgttttgcataaacaaccaatcaaaatattctaaattg 77  Q
    ||||||||  ||||||| | ||||||||||||||||||||||||||    
T  24855232 tccaaaacaattttgcacatacaaccaatcaaaatattctaaattg 24855187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 11331074 - 11330967
Alignment:
Q  19 ggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgt 118  Q
    ||||||| |||| | |||||| |||||||| | | |||||||||||| |||||||||||| |  |||  ||||| | |||| |||| ||||||||||| |    
T  11331074 ggtgggttgacagttcaaaacagttttgcacacataaccaatcaaaacattctaaattgccacatttaacccacataaatt-aaaatcattaattgatat 11330976  T
Q  119 ggcaattca 127  Q
    | |||||||    
T  11330975 gacaattca 11330967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 11489095 - 11488988
Alignment:
Q  19 ggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgt 118  Q
    ||||||| |||| | |||||| |||||||| | | |||||||||||| |||||||||||| |  |||  ||||| | |||| |||| ||||||||||| |    
T  11489095 ggtgggttgacagttcaaaacagttttgcacacataaccaatcaaaacattctaaattgccacatttaacccacataaatt-aaaatcattaattgatat 11488997  T
Q  119 ggcaattca 127  Q
    | |||||||    
T  11488996 gacaattca 11488988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 42060893 - 42061007
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  42060893 tgtggtgggtcgacggtccaaaactgttttgcacaaacaaccaatcaaaa-attttgaattgc-atgtttggcccacgttaattaaaaaacattaattga 42060990  T
Q  116 tgtggcaattcagaatg 132  Q
    |||||||||||||||||    
T  42060991 tgtggcaattcagaatg 42061007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 19064224 - 19064339
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||| |||| |||||||| || ||||| |  ||| ||||||||| ||||| |||||  ||||||||||||| | |||| ||||  |||||||||    
T  19064224 tgtggtgggttgacagtccaaaacagtcttgcacacgcaatcaatcaaaacattctgaattgtcatgtttggcccacataaatt-aaaattattaattga 19064322  T
Q  116 tgtggcaattcagaatg 132  Q
    |||||||||||||||||    
T  19064323 tgtggcaattcagaatg 19064339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 27002455 - 27002542
Alignment:
Q  32 tccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgtgg 120  Q
    |||||||| ||||||||   |||||||||||||||||||| |||||| | |||||| |||  | |||| |||| |||| ||||||||||    
T  27002455 tccaaaacagttttgcacgcacaaccaatcaaaatattctgaattgccacgtttggtccatatgaatt-aaaatcattcattgatgtgg 27002542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 9035312 - 9035422
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||| |||| |||||||| |||||||| |||||| ||||||||| ||||| ||| |  ||||||||| ||| | ||||||||  ||||||||||    
T  9035312 tgtggtgggttgacaatccaaaacagttttgcagaaacaatcaatcaaaacattctcaatagtcatgtttggcacacataaattaaaat-cattaattga 9035410  T
Q  116 tgtggcaattca 127  Q
    ||||||||||||    
T  9035411 tgtggcaattca 9035422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 24229549 - 24229435
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    ||||||| || |||| |||||||| |||||||| | |||||||||||||| ||| | |||| | |||||| |||||| | |||| |||| ||||||||||    
T  24229549 tgtggtgagttgacagtccaaaacagttttgcacacacaaccaatcaaaacattttgaattaccatgtttagcccacataaatt-aaaatcattaattga 24229451  T
Q  116 tgtggcaattcagaat 131  Q
      || |||||||||||    
T  24229450 aatgacaattcagaat 24229435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 19658430 - 19658319
Alignment:
Q  149 tccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcgaattccaactcttat 248  Q
    ||||||||||||| ||||| ||| |  | ||| |||||||   |||||||||||| |||| |||||||    |||||||||| |  ||||||||||||||    
T  19658430 tccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactcttat 19658331  T
Q  249 gttgcattcttc 260  Q
     |||||||||||    
T  19658330 tttgcattcttc 19658319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 19675269 - 19675158
Alignment:
Q  149 tccttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatgggaacatctctggaagcgaattccaactcttat 248  Q
    ||||||||||||| ||||| ||| |  | ||| |||||||   |||||||||||| |||| |||||||    |||||||||| |  ||||||||||||||    
T  19675269 tccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactcttat 19675170  T
Q  249 gttgcattcttc 260  Q
     |||||||||||    
T  19675169 tttgcattcttc 19675158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 24229395 - 24229445
Alignment:
Q  27 gacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattg 77  Q
    |||| |||||||| |||||||| | |||||||||||||||||||| |||||    
T  24229395 gacagtccaaaacagttttgcacacacaaccaatcaaaatattctgaattg 24229445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 34816613 - 34816709
Alignment:
Q  35 aaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgtggcaattcagaatg 132  Q
    ||||| |||||||| | |||| ||||||||||||| | |||||| |||||||  |||| | ||||||||  |||||||||||||||||||||||||||    
T  34816613 aaaacagttttgcacacacaatcaatcaaaatattatgaattgccatgtttgatccacataaattaaaat-cattaattgatgtggcaattcagaatg 34816709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 51460090 - 51460205
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||| || | |||||||  |||||||| | |||||||||||||||||| | ||||||||  ||||  |||| | |||| |||| ||||||||||    
T  51460090 tgtggtgggttgataatccaaaagagttttgcacacacaaccaatcaaaatattttgaattgctacatttgatccacataaatt-aaaatcattaattga 51460188  T
Q  116 tgtggcaattcagaatg 132  Q
    |||| ||||||||||||    
T  51460189 tgtgacaattcagaatg 51460205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 42676985 - 42676919
Alignment:
Q  52 acaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgtg 119  Q
    |||||||||||||||||||| |||||| |||||||  |||||| |||| |||| ||||||||||||||    
T  42676985 acaaccaatcaaaatattctgaattgccatgtttgatccacgtaaatt-aaaatcattaattgatgtg 42676919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 36226887 - 36226933
Alignment:
Q  32 tccaaaactgttttgcataaacaaccaatcaaaatattctaaattgc 78  Q
    ||||||||  ||||||| | |||||||||||||||||||||||||||    
T  36226887 tccaaaacaattttgcacacacaaccaatcaaaatattctaaattgc 36226933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 34816758 - 34816697
Alignment:
Q  17 gtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgc 78  Q
    ||||||||| |||  |||||||| |||||||| | |||||||||||||| ||||| ||||||    
T  34816758 gtggtgggttgacggtccaaaacagttttgcacatacaaccaatcaaaacattctgaattgc 34816697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 25487475 - 25487589
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattga 115  Q
    |||||||||| |||| |||||||| ||||| || | |||||||||||||||||| | |||||  | ||||  ||||| | ||||||||  ||||||||||    
T  25487475 tgtggtgggttgacagtccaaaacagtttt-cacacacaaccaatcaaaatattatgaattgtaacgtttaacccacataaattaaaat-cattaattga 25487572  T
Q  116 tgtggcaattcagaatg 132  Q
    |||| ||||||||||||    
T  25487573 tgtgacaattcagaatg 25487589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 8850658 - 8850597
Alignment:
Q  16 tgtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattg 77  Q
    |||||||||| |||| || ||||| |||||||| | |||||||||||||| |||||||||||    
T  8850658 tgtggtgggttgacagtcaaaaacagttttgcacacacaaccaatcaaaacattctaaattg 8850597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 34707344 - 34707446
Alignment:
Q  17 gtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgat 116  Q
    |||||| || ||||||||||||| ||||||||   |||||||||||||||||||| ||| || | |||||| |||  | |||| |||| | |||||||||    
T  34707344 gtggtgagttgacattccaaaacagttttgcacgtacaaccaatcaaaatattctgaatcgccacgtttggtccatatgaatt-aaaatcgttaattgat 34707442  T
Q  117 gtgg 120  Q
    ||||    
T  34707443 gtgg 34707446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 44183944 - 44184044
Alignment:
Q  32 tccaaaactgttttgcataaacaaccaat-caaaatattctaaattgctatgtttggcccacgttaattaaaaaacattaattgatgtggcaattcagaa 130  Q
    |||||||  |||||||| | ||||||||| ||||| ||||| |||||  | |||||| |||| | ||||||||  |||||||||||||| ||||||||||    
T  44183944 tccaaaatagttttgcagacacaaccaattcaaaacattctgaattgtcacgtttggtccacataaattaaaat-cattaattgatgtgacaattcagaa 44184042  T
Q  131 tg 132  Q
    ||    
T  44184043 tg 44184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 44184093 - 44184033
Alignment:
Q  17 gtggtgggtcgacattccaaaactgttttgcataaacaaccaatcaaaatattctaaattg 77  Q
    ||||||||| |||  |||||||| |||||||| | |||||||||||||| ||||| |||||    
T  44184093 gtggtgggttgacggtccaaaacagttttgcacacacaaccaatcaaaacattctgaattg 44184033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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