View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_12 (Length: 942)

Name: NF8889_low_12
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_12
NF8889_low_12
[»] chr2 (2 HSPs)
chr2 (166-942)||(29663202-29663982)
chr2 (81-122)||(29663984-29664025)
[»] chr5 (1 HSPs)
chr5 (81-153)||(6326340-6326412)
[»] chr1 (1 HSPs)
chr1 (102-153)||(47989442-47989493)
[»] scaffold0053 (1 HSPs)
scaffold0053 (81-153)||(8742-8814)
[»] chr4 (2 HSPs)
chr4 (102-154)||(4157101-4157153)
chr4 (81-153)||(20633429-20633501)
[»] scaffold0008 (1 HSPs)
scaffold0008 (81-136)||(263415-263470)
[»] chr7 (2 HSPs)
chr7 (81-135)||(26329425-26329479)
chr7 (81-122)||(5235961-5236002)
[»] chr6 (1 HSPs)
chr6 (81-155)||(426557-426631)
[»] chr3 (1 HSPs)
chr3 (861-903)||(34251245-34251287)
[»] chr8 (1 HSPs)
chr8 (101-154)||(24413623-24413676)


Alignment Details
Target: chr2 (Bit Score: 681; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 166 - 942
Target Start/End: Complemental strand, 29663982 - 29663202
Alignment:
Q  166 ttattgaattaataatgtctgtatttaaaaataaacaaaataggaaatatgcatgtatttatacactaattggaaaaataaatgaacttttttctgacaa 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29663982 ttattgaattaataatgtctggatttaaaaataaacaaaataggaaatatgcatgtatttatacactaattggaaaaataaatgaacttttttctgacaa 29663883  T
Q  266 ataaaaattactatatgaagttgaattatttgattatag----------atgattaaaataatagaagatgcaatatagatttcagtgagtattgttctg 355  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29663882 ataaaaattactatatgaagttgaattatttgattatagttttcatctaatgattaaaataatagaagatgcaatatagatttcagtgaatattgttctg 29663783  T
Q  356 gagtcttccatacaaggtttcaataatatgttggagcactatattattatttttaattggatttggatttggatttaggaattacgaatgttgagttgta 455  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||    
T  29663782 gagtcttccatacaaggtttcaataatatgttgcagcactatattattatttttaattggatttggattt------aggaattacgaatgttgagttgta 29663689  T
Q  456 atagtggcgtcggctttgatgctggcaacaactgacgcttgcttggagtacaatcttcaaccacatattcaactgaacaccttctgctgtgtttggataa 555  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29663688 atagtggcttcagctttgatgctggcaacaactgacgcttgcttggagtacaatcttcaaccacatattaaactgaacaccttctgctgtgtttggataa 29663589  T
Q  556 tgtatgcagtacaatttacagtcaacagttgaacaactagcaacttatttgtggccaaaattgctccacaaaccaatataggaaatgtgagacattattt 655  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29663588 tgtatgcagcacaatttacagtcaacagttgaacaactagcaacttatttgtggccaaaattgctccacaaaccaatataggaaatgtgagacattattt 29663489  T
Q  656 aataactaaagaattaaaaacttaatcatacaatgtgcagtatcaatgcattggtatggtttggcttggtgaagaagttagagtggatgtaggtgtatta 755  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  29663488 aataactaaagaattaaaaacttaatcatacaatgtgtagtatcaatgcattggtatggtttcgcttggtggagaagttagagtggatgtaggtgtatta 29663389  T
Q  756 gatcattatcaaacatatataggatgtggatgactcacacgttataaaattatcggattcaagtatgaatagttatttgttattgctcttgccactctcc 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29663388 gatcattatcaaacatatataggatgtggatgactcacacgttataaaattatcggattcaagtatgaatagttatttgttgttgctcttgccactctcc 29663289  T
Q  856 ctatcttgttgagtatgactcatatatagacacggaagaggggaagggatatggaagctgagctagtgaagctccctccgcccctgc 942  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29663288 ctatcttgttgagtatgactcatatatagacacggaagaggggaaggggtatggaagctgagctagtgaagctccctccgcccctgc 29663202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 29664025 - 29663984
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtc 122  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29664025 aaattattagcactgtcgacatgtcagtgtctgtgtcgtgtc 29663984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 6326340 - 6326412
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcatag 153  Q
    |||||| |||| |||||| | |||||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  6326340 aaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtccttatccatgcttcatag 6326412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 47989493 - 47989442
Alignment:
Q  102 tgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcatag 153  Q
    |||||||||||||||||||||| |||||||||||  | ||||||||||||||    
T  47989493 tgtcagtgtctgtgtcgtgtctggtatccgtgtctgtatccatgcttcatag 47989442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 8814 - 8742
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcatag 153  Q
    |||||||||||  ||||| | |||||||||| ||||||||||  || ||||||||| | ||||||||||||||    
T  8814 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcatag 8742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 4157153 - 4157101
Alignment:
Q  102 tgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcataga 154  Q
    |||||||||||||||||||||| || ||||||||| | ||| |||||||||||    
T  4157153 tgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcataga 4157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 20633501 - 20633429
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcatag 153  Q
    |||||||||||  ||||||| |||||||||| || |||||||| || ||||||||| | ||| ||||||||||    
T  20633501 aaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtccgtatccgtgcttcatag 20633429  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 263415 - 263470
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtctagtatccgtgtcc 136  Q
    |||||||||||| ||| |||||||||||||| ||||||| || ||| |||||||||    
T  263415 aaattattagcagtgttgacatgtcagtgtccgtgtcgtatccagtgtccgtgtcc 263470  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 26329425 - 26329479
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtctagtatccgtgtc 135  Q
    ||||||||| | |||||| | ||||||||||||||||||||| ||| ||||||||    
T  26329425 aaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgtgtc 26329479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 5236002 - 5235961
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtc 122  Q
    |||||||||||  ||||||| |||||||||||||||||||||    
T  5236002 aaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtc 5235961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 426557 - 426631
Alignment:
Q  81 aaattattagcaatgtcgacatgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcatagat 155  Q
    ||||||||| |  ||||| | |||||||||| ||||||||||  |||||||||||  | ||||||||||||||||    
T  426557 aaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttcatagat 426631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 861 - 903
Target Start/End: Complemental strand, 34251287 - 34251245
Alignment:
Q  861 ttgttgagtatgactcatatatagacacggaagaggggaaggg 903  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  34251287 ttgttgagtatgactcatatatagacacaaaagagggcaaggg 34251245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 24413623 - 24413676
Alignment:
Q  101 atgtcagtgtctgtgtcgtgtctagtatccgtgtccttgtccatgcttcataga 154  Q
    ||||||||||| ||||||||||| || ||||||||| | ||| |||||||||||    
T  24413623 atgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcataga 24413676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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