View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_121 (Length: 275)
Name: NF8889_low_121
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_121 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: scaffold1750 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 1035 - 836
Alignment:
| Q |
18 |
tcttcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcatcacagtttggtgtcttaataattctgtcattgcccatt |
117 |
Q |
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| T |
1035 |
tcttcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcatcacagtttggtgtcttaataattctgtcattgcccatt |
936 |
T |
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| Q |
118 |
ctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatgtatgc-cgggggaaagcaaaatttaattatattagcttcttccaaagatt |
216 |
Q |
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| T |
935 |
ctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatgtatgcaggggggaaagcaaaatttaattatattagcttcttccaaagatt |
836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 35656726 - 35656580
Alignment:
| Q |
21 |
tcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcatcacagtttggtgtcttaataattctgtcattgcccattcta |
120 |
Q |
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| T |
35656726 |
tcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatgcatcacagtttggtgtcttaatagttctgtcatcgcccattcta |
35656627 |
T |
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| Q |
121 |
gaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatg |
167 |
Q |
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| T |
35656626 |
gaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctacatg |
35656580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 35650046 - 35649902
Alignment:
| Q |
21 |
tcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcatcacagtttggtgtcttaataattctgtcattgcccattcta |
120 |
Q |
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| T |
35650046 |
tcagttacatgagttctgttaccaaccacagttctcacctcatcttgcaatttatgcatcactgtttggtgtcttaatagttctgtcattgtccattcta |
35649947 |
T |
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| Q |
121 |
gaactgtgtaggtagtatcagtacctgcggcaaacatgtcctaca |
165 |
Q |
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| T |
35649946 |
ggactgtgtaagtagtatcagtacctgcaataaacatgtcctaca |
35649902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 35678126 - 35677982
Alignment:
| Q |
21 |
tcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcatcacagtttggtgtcttaataattctgtcattgcccattcta |
120 |
Q |
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| T |
35678126 |
tcagttacatgagttatgttaccaaccacagttctcacctcatcttgcaatttatgcatcactgtttggtgtcttaatagttctgtcattgtccattcta |
35678027 |
T |
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| Q |
121 |
gaactgtgtaggtagtatcagtacctgcggcaaacatgtcctaca |
165 |
Q |
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| T |
35678026 |
ggactgtgtaagtagtatcagtacctgcaataaacatgtcctaca |
35677982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 35642470 - 35642328
Alignment:
| Q |
20 |
ttcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcatcacagtttggtgtcttaataattctgtcattgcccattct |
119 |
Q |
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|||||||||||||||| | || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
35642470 |
ttcagttacatgagttctattacctaccacagttctcacctcatcttgcaatttatgcatcactgtttggtgtcttaacagttctgtcattgcccattct |
35642371 |
T |
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| Q |
120 |
agaactgtgtaggtagtatcagtacctgcggcaaacatgtcct |
162 |
Q |
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| T |
35642370 |
aagactgtgtaggtagtatcagtacctgcagcaaacatgtcct |
35642328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 11708332 - 11708361
Alignment:
| Q |
210 |
aaagattgattatttggaattgatagaatg |
239 |
Q |
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| T |
11708332 |
aaagattgattatttggaattgatagaatg |
11708361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 40529 - 40482
Alignment:
| Q |
210 |
aaagattgattatttggaattgatagaatggaaaaagttaattacaat |
257 |
Q |
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| T |
40529 |
aaagattgattatttggaatagatagaatgagaaaagttgattacaat |
40482 |
T |
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