View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_122 (Length: 274)

Name: NF8889_low_122
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_122
NF8889_low_122
[»] chr7 (3 HSPs)
chr7 (18-274)||(34645061-34645317)
chr7 (64-268)||(34658134-34658338)
chr7 (65-271)||(34664808-34665014)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 34645061 - 34645317
Alignment:
Q  18 actattgataccaataatgtaccagaataattaccaatggctgtagttatgcaatacaaagcagtagcactacttctcatactttcaggtgattgatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34645061 actattgataccaataatgtaccagaataattaccaatggctgtagttatgcaatacaaagcagtagcactacttctcatactttcaggtgattgatcaa 34645160  T
Q  118 agagaaattccaaatgtccaacagacatgaaaacttcagccactccatgaagacaatattgaggtactaaccaaaatacactaatagggattattgcttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34645161 agagaaattccaaatgtccaacagacatgaaaacttcagccactccatgaagacaatattgaggtactaaccaaaatacactaaaagggattattgcttt 34645260  T
Q  218 tggatcatccaataagttaaactttgcagcaactgtttttcttttcatttccactag 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34645261 tggatcatccaataagttaaactttgcagcaactgtttttcttttcgtttccactag 34645317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 34658134 - 34658338
Alignment:
Q  64 ttatgcaatacaaagcagtagcactacttctcatactttcaggtgattgatcaaagagaaattccaaatgtccaacagacatgaaaacttcagccactcc 163  Q
    |||||||||| | ||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| ||||| ||||| | |||    
T  34658134 ttatgcaatagatagctgtagcagtacttctcatactttcaggtgcttgatcaaagagaaattcaaaaagtccaacagacataaaaacatcagcaagtcc 34658233  T
Q  164 atgaagacaatattgaggtactaaccaaaatacactaatagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttc 263  Q
    ||||| ||||||||||||||| |||||||||||||| || || || ||||||||||||||||||||||||||| |||| |||||||||  |||||||||     
T  34658234 atgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcagcaacttcttttcttttg 34658333  T
Q  264 atttc 268  Q
    |||||    
T  34658334 atttc 34658338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 271
Target Start/End: Original strand, 34664808 - 34665014
Alignment:
Q  65 tatgcaatacaaagcagtagcactacttctcatactttcaggtgattgatcaaagagaaattccaaatgtccaacagacatgaaaacttcagccactcca 164  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  34664808 tatgcagtacaaagcagtagcactgcttctcatactttcaggtgattgatcatagagaaattctaaatgtccaacattcatgaaaacttcagccactcca 34664907  T
Q  165 tgaagacaatattgaggtactaaccaaaatacactaatagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttca 264  Q
    || | | |||| |||||||| |||||||| ||||| |||||||| ||||||||||||  ||| |||||||   | || | ||||||| |||||||||| |    
T  34664908 tgcaaaaaatactgaggtaccaaccaaaacacacttatagggataattgcttttggactatctaataagtggtatttggaagcaactttttttcttttga 34665007  T
Q  265 tttccac 271  Q
    |||||||    
T  34665008 tttccac 34665014  T

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