View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_129 (Length: 269)
Name: NF8889_low_129
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_129 |
 | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
| [»] scaffold0002 (4 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0654 (2 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 33056197 - 33056437
Alignment:
| Q |
5 |
atggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagtt |
104 |
Q |
| |
|
||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
33056197 |
atggatatcattttaagtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagtt |
33056296 |
T |
|
| Q |
105 |
cgtgcgccggtcacgatattgaattttgggtcttagacataaataaacacaattaatcagttatgnnnnnnnnnnnntaccttcatggtttaaactttga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33056297 |
cgtgcgccggtcacgatattgaattttgggtctt-gacataaataaacacaattaatcagttatgaaaaacaaaaaataccttcatggtttaaactttga |
33056395 |
T |
|
| Q |
205 |
aactaaaaatattcaaggccatgaaaacccagttatggaaag |
246 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
33056396 |
aactaaaaatattcaaggcaatgaaaactcagttatggaaag |
33056437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 33063677 - 33063804
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33063677 |
tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcg---tcaataggcttgccggactagggtgctctagttc |
33063773 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| |
|
|
| T |
33063774 |
gtacgccggtcatgatattgaattttgggtc |
33063804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 30130911 - 30131025
Alignment:
| Q |
13 |
cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgcc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
30130911 |
cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaag---ggtcgtcaataggctttccggactaggaagctctagttcgtgcgcc |
30131007 |
T |
|
| Q |
113 |
ggtcacgatattgaattt |
130 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
30131008 |
gatcacgaaattgaattt |
30131025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 27527812 - 27527934
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||| || |||||||| |
|
|
| T |
27527812 |
tggatatcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagt---gttgtcattaggcttgccggactaggatgttctagttc |
27527908 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaatttt |
131 |
Q |
| |
|
||||| |||||||||| |||||||| |
|
|
| T |
27527909 |
gtgcgtcggtcacgattgtgaatttt |
27527934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 15970066 - 15969961
Alignment:
| Q |
25 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatatt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| ||| | || |||| ||||||||||||||||||| | |
|
|
| T |
15970066 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagtgt---cgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgt |
15969970 |
T |
|
| Q |
125 |
gaattttgg |
133 |
Q |
| |
|
||||||||| |
|
|
| T |
15969969 |
gaattttgg |
15969961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 28041304 - 28041402
Alignment:
| Q |
34 |
tgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgg |
133 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| |||| |||| ||| |||||| || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
28041304 |
tgaaaattgtttaaattatagtt-gccaagtgtcgtc---aataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgg |
28041399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 6952786 - 6952900
Alignment:
| Q |
19 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcac |
118 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| ||||| | |||||| || ||||||| |||| ||||||| |
|
|
| T |
6952786 |
aagtgaaagttaatttaaaaattgtttaaattatagtttgccaagt---gtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcag |
6952882 |
T |
|
| Q |
119 |
gatattgaattttgggtc |
136 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
6952883 |
gattttaaattttgggtc |
6952900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 22014634 - 22014696
Alignment:
| Q |
74 |
aataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22014634 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtc |
22014696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 25477738 - 25477676
Alignment:
| Q |
68 |
gtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattt |
130 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||| |
|
|
| T |
25477738 |
gtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaattt |
25477676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 14011684 - 14011733
Alignment:
| Q |
72 |
tcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgat |
121 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||||||| ||||||| |
|
|
| T |
14011684 |
tcaataggcttgccgggctagaatgttctagttcgtgcgccgatcacgat |
14011733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 10416508 - 10416635
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
10416508 |
tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcg---tcaataggcttgccggactaggatgctctagttc |
10416604 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10416605 |
gtgcgccggtcacgatattgaattttgggtc |
10416635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 4698464 - 4698591
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
4698464 |
tggatatcattacaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaag---ggtcgttaatagacttgccggactaggatgttctagttc |
4698560 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
4698561 |
atgcgccggtcacgaaattgaattttgggtc |
4698591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 808310 - 808183
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||| |||| || |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
808310 |
tggatatcattttaaatgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtc---aataggcttgccggactaggatgttctagttc |
808214 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
808213 |
gtgcgccggtcacgattgtgaattttgggtc |
808183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 2588428 - 2588527
Alignment:
| Q |
33 |
ttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttg |
132 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2588428 |
ttgaaaattgtttaaactatagtt-gccaagtgtcg---tcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaattttg |
2588523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 44324742 - 44324804
Alignment:
| Q |
74 |
aataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44324742 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtc |
44324804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 45333308 - 45333357
Alignment:
| Q |
72 |
tcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgat |
121 |
Q |
| |
|
|||||||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
45333308 |
tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacgat |
45333357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 16104766 - 16104893
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
16104766 |
tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtc---aataggcttgccggactaggatgctctagttc |
16104862 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16104863 |
gtgcgccggtcacgatattgaattttgggtc |
16104893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 16101315 - 16101437
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16101315 |
atcattttaagtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtc---aataggcttgccggactaggatgctctagttcgtgcg |
16101411 |
T |
|
| Q |
111 |
ccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
16101412 |
ccggtcacgatattgaattttgggtc |
16101437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 19657022 - 19656895
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
19657022 |
tggatatcattataagtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtc---aataggcttgccggactaggatgctctagttc |
19656926 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
19656925 |
gtgcgccggtcacgatattgaatcttgggtc |
19656895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 14650840 - 14650957
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
14650840 |
atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagt---gttgtcattaggcttgccggactaggatgttctagttcgtgcg |
14650936 |
T |
|
| Q |
111 |
ccggtcacgatattgaatttt |
131 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
14650937 |
ccggtcacgattgtgaatttt |
14650957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 14654840 - 14654957
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
14654840 |
atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagt---gttgtcattaggcttgccggactaggatgttctagttcgtgcg |
14654936 |
T |
|
| Q |
111 |
ccggtcacgatattgaatttt |
131 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
14654937 |
ccggtcacgattgtgaatttt |
14654957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 14660631 - 14660748
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
14660631 |
atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagt---gttgtcattaggcttgccggactaggatgttctagttcgtgcg |
14660727 |
T |
|
| Q |
111 |
ccggtcacgatattgaatttt |
131 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
14660728 |
ccggtcacgattgtgaatttt |
14660748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 29287817 - 29287710
Alignment:
| Q |
25 |
aagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatatt |
124 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| | |
|
|
| T |
29287817 |
aagtcaaattgaaaattgtttaaattatagtt-gtcaagtgtcgtc---aataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgt |
29287722 |
T |
|
| Q |
125 |
gaattttgggtc |
136 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29287721 |
gaattttgggtc |
29287710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 17478343 - 17478221
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||| ||| ||| ||||||||| |||||| || ||||||||||||| |
|
|
| T |
17478343 |
atcattttaagtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtc---aattggcttgccgaactaggatgttctagttcgtgcg |
17478247 |
T |
|
| Q |
111 |
ccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
17478246 |
ccggtcacgattgtgaattttgggtc |
17478221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 17652875 - 17652813
Alignment:
| Q |
74 |
aataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17652875 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtc |
17652813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 47050133 - 47050065
Alignment:
| Q |
68 |
gtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||| ||||| ||||||||| || ||||||| ||||||| |||||| | ||||||||||||| |
|
|
| T |
47050133 |
gtcgtcaatatgcttgtcggactaggatgttctagtttgtgcgccagtcacggttgtgaattttgggtc |
47050065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 7688541 - 7688431
Alignment:
| Q |
23 |
gaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgata |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
7688541 |
gaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtc---aataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaa |
7688445 |
T |
|
| Q |
123 |
ttgaattttgggtc |
136 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
7688444 |
ttgaattttaggtc |
7688431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 5705193 - 5705071
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||||||| ||| |
|
|
| T |
5705193 |
atcattctaagtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtc---aataggcttgccggactaggatgtcttagttcgagcg |
5705097 |
T |
|
| Q |
111 |
ccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5705096 |
ccggtcacgatattgaattttgggtc |
5705071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 28104380 - 28104491
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| || | |||||||||||||||||||| ||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
28104380 |
tggatatcattttaagtgaaagtcaatttgaaatttatctaaattatagtttgtcaagt---gtcgtcattaggcttgccggactaggatgttctagttc |
28104476 |
T |
|
| Q |
106 |
gtgcgccggtcacga |
120 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28104477 |
atgcgccggtcacga |
28104491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 28058143 - 28058034
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||| || | |||||||||||||||||| ||| || | |||||||||||||||||| || |||||||| |
|
|
| T |
28058143 |
tggatatcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttat---taggcttgccggactaggatgttctagttc |
28058047 |
T |
|
| Q |
106 |
gtgcgccggtcac |
118 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28058046 |
gtgcgccggtcac |
28058034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 28068568 - 28068459
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||| || | |||||||||||||||||| ||| || | |||||||||||||||||| || |||||||| |
|
|
| T |
28068568 |
tggatatcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttat---taggcttgccggactaggatgttctagttc |
28068472 |
T |
|
| Q |
106 |
gtgcgccggtcac |
118 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28068471 |
gtgcgccggtcac |
28068459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 19435605 - 19435704
Alignment:
| Q |
33 |
ttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttg |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||| |||| |||| ||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
19435605 |
ttgaaaattgtttaaattatagtt-gtcaagtgtcg---tcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaattttg |
19435700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 11201241 - 11201289
Alignment:
| Q |
73 |
caataggcttgccggactagggtgctctagttcgtgcgccggtcacgat |
121 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||||| ||||||| |
|
|
| T |
11201241 |
caataggcttgccgggctagaatgttctagttcgtgcgccgatcacgat |
11201289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 28804121 - 28804248
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
28804121 |
tggatatcattttaagtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatc---aatagacttgccggactaggatgctctagttc |
28804217 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
28804218 |
gtgcgccggtcacgatattaaattttgggtc |
28804248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 26525364 - 26525486
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| |||||| ||||||| ||||||| | || ||||||||||||||||||||||| ||||||| |||| ||| |||| | ||||||||||||| |
|
|
| T |
26525364 |
atcattttaagtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcg---tcaatagacttgtcgggctagaaagttctagttcgtgcg |
26525460 |
T |
|
| Q |
111 |
ccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
26525461 |
ccggtcacgatattgaatttttggtc |
26525486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 36263778 - 36263729
Alignment:
| Q |
72 |
tcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgat |
121 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
36263778 |
tcaataggcttgccgggctaaaatgttctagttcgtgcgccggtcacgat |
36263729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 5358221 - 5358109
Alignment:
| Q |
22 |
tgaaagtcaa-tttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacga |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5358221 |
tgaaagtcaaatttgaaaattgtttaaattatagtttgtcaagtgtcgtc---aataggcttgccggactaggatgttctagttcgtgcgccggtcacga |
5358125 |
T |
|
| Q |
121 |
tattgaattttgggtc |
136 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
5358124 |
ttttagattttgggtc |
5358109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 30874010 - 30873898
Alignment:
| Q |
19 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcac |
118 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||| ||||||||||||| |
|
|
| T |
30874010 |
aagtgaaggtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtc---aataggcttgccggactaagatgttctagtttgtgcgccggtcac |
30873914 |
T |
|
| Q |
119 |
gatattgaattttggg |
134 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
30873913 |
gattttgaattttggg |
30873898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 27560733 - 27560634
Alignment:
| Q |
33 |
ttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttg |
132 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
27560733 |
ttgaaaattgtttaaattatagtt-gccaagtgtcgtc---aataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttg |
27560638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 18693804 - 18693736
Alignment:
| Q |
68 |
gtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18693804 |
gtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtc |
18693736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 51534256 - 51534321
Alignment:
| Q |
71 |
gtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51534256 |
gtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtc |
51534321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 28602747 - 28602620
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| |
|
|
| T |
28602747 |
tggatatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgtcaagtgtcgtt---aataggcttgccggactaggatgttctaattc |
28602651 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
28602650 |
gtgcgccggtcacgattgtgaattttgggtc |
28602620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 15925502 - 15925629
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||| | |||||||||||||||||||||||||| || ||||||| | || |||||||||| ||||||||| ||||||| || |
|
|
| T |
15925502 |
tggatatcattttaagtgagaaacaatttgaaaattgtttaaattataggttatcaagtgccatc---aataggcttgacggactaggatgctctaattt |
15925598 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
15925599 |
gtgcgccggtcacgatattaaattttgggtc |
15925629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 4706284 - 4706157
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||| |||| || |||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||| || ||||||| |
|
|
| T |
4706284 |
tggatatcattttaaatgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtc---aacgggcttgccggactaggatgttctagttt |
4706188 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
4706187 |
gtgcgccggtcacgattgtgaattttgggtc |
4706157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 18983071 - 18983120
Alignment:
| Q |
72 |
tcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgat |
121 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
18983071 |
tcaataggcttgccgagctagaatgttctagttcgtgcgccggtcacgat |
18983120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 5519108 - 5518981
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| |||||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||| |
|
|
| T |
5519108 |
tggatatcattttaagtgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtc---aataggcttgccggactatgatgttctagttc |
5519012 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
5519011 |
gtgcgccggtcacgattgtgaattttgggtc |
5518981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 42786077 - 42786179
Alignment:
| Q |
31 |
atttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattt |
130 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| | ||||| |
|
|
| T |
42786077 |
atttaaaaattgtttaaattatagtttgttaagtgtcg---tcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattataaattt |
42786173 |
T |
|
| Q |
131 |
tgggtc |
136 |
Q |
| |
|
|||||| |
|
|
| T |
42786174 |
tgggtc |
42786179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 27197914 - 27197792
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||| |||| ||||||||||||||||| || |||| ||| ||||||| |||||| || |||||||| |
|
|
| T |
27197914 |
tggatatcattttaagtgaaagtcaatttaaaaattatttatattatagtttgtcaagt---gttgtcattagacttgccgaactaggatgttctagttc |
27197818 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaatttt |
131 |
Q |
| |
|
|||||||| ||||||| |||||||| |
|
|
| T |
27197817 |
gtgcgccgatcacgattgtgaatttt |
27197792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 15599462 - 15599525
Alignment:
| Q |
68 |
gtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaatttt |
131 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||||||||| | |||||||| |||| |||| |
|
|
| T |
15599462 |
gtcgtcaataggcttgccgaactaggatgttctagttcgtgcgtccgtcacgattttgagtttt |
15599525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 1277 - 1399
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||||| || |||| ||||||| |||||||||| || |||||||| |
|
|
| T |
1277 |
tggatatcattttaagtgtaagtcaatttgaaaattatttaaattatagtttgtcaagt---gttgtcattaggctttccggactaggatgttctagttc |
1373 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaatttt |
131 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
1374 |
gtgcgccggtcacgattgtgaatttt |
1399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 10306 - 10392
Alignment:
| Q |
47 |
aattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10306 |
aattatagtttgtcaagtgtcatc---aataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtc |
10392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 406586 - 406459
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| || | ||| ||| || |||||||| |
|
|
| T |
406586 |
tggatatcattttaagtgaaagtcaatttaaaaattatttaaattatagtttgtcaagt---ttcgtcaataggttttactgacaaggatgttctagttc |
406490 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |
|
|
| T |
406489 |
gtgcgccgatcacgattttgaattttgggtc |
406459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 423957 - 423894
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtc |
70 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
423957 |
tggatatcattttaagtgaaaatcaatttaaaaattgtttaaa-tatagtttgtcaagtttcgtc |
423894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 412579 - 412524
Alignment:
| Q |
13 |
cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcg |
68 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||||||||||||| |||| ||||| |
|
|
| T |
412579 |
cattttaagtgaaagtcaatttaaaaattatttaaattatagtttctcaattgtcg |
412524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 115391 - 115269
Alignment:
| Q |
11 |
atcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcg |
110 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| || |||| | ||||||||||||| |
|
|
| T |
115391 |
atcattttaagtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgt---cgtcaatagacttgcctgattaggatattctagttcgtgcg |
115295 |
T |
|
| Q |
111 |
ccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
||| ||| ||| ||||||||||||| |
|
|
| T |
115294 |
ccgatcatgattgtgaattttgggtc |
115269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 4091 - 3964
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttc |
105 |
Q |
| |
|
|||| |||||| | ||||||| ||||||| |||||||||||||||||||| || ||||| ||||| ||||| |||||| ||||||| || |||||||| |
|
|
| T |
4091 |
tggatatcattttcagtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagt---gtcgttaatagacttgcctgactaggatgttctagttc |
3995 |
T |
|
| Q |
106 |
gtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||| |||| || ||||||||||||| |
|
|
| T |
3994 |
gtgcgccgatcactattgtgaattttgggtc |
3964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 5445 - 5316
Alignment:
| Q |
6 |
tggacatcattataagtgaaagtcaatttgaaaattgtttaaattata--gtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagt |
103 |
Q |
| |
|
|||| |||||| | ||||||| ||||||| |||||||||||||||||| || |||||||||||||| ||||| |||||| ||||||| || |||||| |
|
|
| T |
5445 |
tggatatcattttcagtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtc---aatagacttgcctgactaggatgttctagt |
5349 |
T |
|
| Q |
104 |
tcgtgcgccggtcacgatattgaattttgggtc |
136 |
Q |
| |
|
|||||||||| |||| || ||||||||||||| |
|
|
| T |
5348 |
tcgtgcgccgatcactattgtgaattttgggtc |
5316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 233174 - 233060
Alignment:
| Q |
19 |
aagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcac |
118 |
Q |
| |
|
||||||||||||| ||| |||| || | |||| || |||||||||||| ||| ||||| ||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
233174 |
aagtgaaagtcaaattggaaatagtctgaattttaatttgtcaagtgttgtc---aatagacttgccgaactaggatgttctagttcgtgcgccggtcac |
233078 |
T |
|
| Q |
119 |
gatattgaattttgggtc |
136 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
233077 |
gattgtgaattttgggtc |
233060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 4129 - 4216
Alignment:
| Q |
39 |
attgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttgccggactagggtgctctagttcgtgcgccggtcacgatattgaattt |
130 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
4129 |
attgtttaaattatagtt-gccaagtgtcg---tcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaattt |
4216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 61210 - 61258
Alignment:
| Q |
74 |
aataggcttgccggactagggtgctctagttcgtgcgccggtcacgata |
122 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
61210 |
aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgata |
61258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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