View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_13 (Length: 788)
Name: NF8889_low_13
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_13 |
 | |
|
| [»] scaffold0002 (4 HSPs) |
| | |
|
| [»] scaffold0148 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 80 - 572
Target Start/End: Original strand, 6954140 - 6954632
Alignment:
| Q |
80 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954140 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
6954239 |
T |
|
| Q |
180 |
cctctgctctaccagctgagctatcccatccattcatgacacaccaccctaaatttaggaaatttcttaagtctatgtcaactaaagnnnnnnnnnnggg |
279 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
6954240 |
cctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaattttaggaaattacttgagtctatgtcaactaaataaaaaaaaaaggg |
6954339 |
T |
|
| Q |
280 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggactcgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954340 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
6954439 |
T |
|
| Q |
380 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954440 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
6954539 |
T |
|
| Q |
480 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgcacctatcc |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954540 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgcacctatcc |
6954632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 614 - 741
Target Start/End: Original strand, 6954674 - 6954801
Alignment:
| Q |
614 |
cggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatc |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954674 |
cggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatc |
6954773 |
T |
|
| Q |
714 |
caattaagtccgtagcgtctaccaattt |
741 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6954774 |
caattaagtccgtagcgtctaccaattt |
6954801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 10477859 - 10477955
Alignment:
| Q |
4 |
attcattctttagctagaaagagtatatctccgtacgcctagataaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10477859 |
attcattctttagctagaaagagtatatctccgtacgcctagaaaaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaattt |
10477955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6954089 - 6954146
Alignment:
| Q |
1 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954089 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
6954146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 37421987 - 37422086
Alignment:
| Q |
44 |
agataaattatgtatgatgatcaagaccact-aaaaatatgtatctattcccaaatttatt----aaaatttgggaatagatactcatagaaatgaatcg |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
37421987 |
agataaattatgtatgatgatcaagaccactgataaatatgtatctattcccatattaattttaataaattaaggaatagatactcatacaaatgaatcg |
37422086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 80 - 572
Target Start/End: Complemental strand, 18183949 - 18183457
Alignment:
| Q |
80 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183949 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
18183850 |
T |
|
| Q |
180 |
cctctgctctaccagctgagctatcccatccattcatgacacaccaccctaaatttaggaaatttcttaagtctatgtcaactaaagnnnnnnnnnnggg |
279 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
18183849 |
cctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaattttaggaaattacttgagtctatgtcaactaaataaaaaaaaaaggg |
18183750 |
T |
|
| Q |
280 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggactcgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183749 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
18183650 |
T |
|
| Q |
380 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183649 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
18183550 |
T |
|
| Q |
480 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgcacctatcc |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183549 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgcacctatcc |
18183457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 614 - 755
Target Start/End: Complemental strand, 18183415 - 18183274
Alignment:
| Q |
614 |
cggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatc |
713 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18183415 |
cggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacctggtaagtttccataccaaggctcaatc |
18183316 |
T |
|
| Q |
714 |
caattaagtccgtagcgtctaccaatttcgccatatcccccg |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183315 |
caattaagtccgtagcgtctaccaatttcgccatatcccccg |
18183274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 430 - 572
Target Start/End: Complemental strand, 35160302 - 35160160
Alignment:
| Q |
430 |
cgtctgattaatcagttattcaaaagatccatcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaac |
529 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35160302 |
cgtctcattaatcagttattcaaaagatcaatcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaac |
35160203 |
T |
|
| Q |
530 |
tccatttgttagaacagcttccattgagtctctgcacctatcc |
572 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35160202 |
tccaattgttagaacagcttccattgagtctctgcacctatcc |
35160160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 615 - 755
Target Start/End: Complemental strand, 35160117 - 35159977
Alignment:
| Q |
615 |
ggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatcc |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35160117 |
ggaaagaaggatttggctcaggattgcccatttttaattccagagtttctctgaatttgaaagttttcacttggtaagtttccataccaaagctcaatcc |
35160018 |
T |
|
| Q |
715 |
aattaagtccgtagcgtctaccaatttcgccatatcccccg |
755 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35160017 |
aattaagtccgtagcgtctaccaatttcaccatatcccccg |
35159977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 618 - 750
Target Start/End: Complemental strand, 47475060 - 47474927
Alignment:
| Q |
618 |
aagaaggatttggctcaggattgcccatttttaattccagggtttct-ctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatccaa |
716 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47475060 |
aagaatgatttggcccaggattgtccatttttaattatagagttttttctgaatttgaaagttttcacttggtaagtttccataccaaggctcgatccaa |
47474961 |
T |
|
| Q |
717 |
ttaagtccgtagcgtctaccaatttcgccatatc |
750 |
Q |
| |
|
| | || | ||| || ||||||||| ||||||| |
|
|
| T |
47474960 |
tcatgttcatagtgtttaccaatttttccatatc |
47474927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18184000 - 18183943
Alignment:
| Q |
1 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18184000 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
18183943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 22332634 - 22332886
Alignment:
| Q |
1 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22332634 |
tctattcattctttagctagaaagagtatatttccgtacgcctagataaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaattt |
22332733 |
T |
|
| Q |
101 |
attaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccagctgagc |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22332734 |
at-aaaatttgggaatagattctcatagaaatgaatcgtcgggaaccagatttgaactggtgacacgaggattttcagtcccctgctctaccagctgagc |
22332832 |
T |
|
| Q |
201 |
tatcccatccattcatgacacaccaccctaaatttaggaaatttcttaagtcta |
254 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
22332833 |
tatcccaaccattctagacacaccaccctaattttaggaaattacttgagtcta |
22332886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 350 - 558
Target Start/End: Original strand, 13622034 - 13622242
Alignment:
| Q |
350 |
aaagtcgacggattttcctcttactaaaaatttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttatt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
13622034 |
aaagtcgacggattttcctcttactaaaaatttcattgatgtcggtattgacatgtagaatgggactcgatctttattttcgtctgattaatcagttatt |
13622133 |
T |
|
| Q |
450 |
caaaagatccatcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagctt |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13622134 |
caaaagatccatcagactatggtggagtgactgatttgatcaatcaatattattctattgaaagagtaaatgttgtcaactccatttgttagaacagctt |
13622233 |
T |
|
| Q |
550 |
ccattgagt |
558 |
Q |
| |
|
||||||||| |
|
|
| T |
13622234 |
ccattgagt |
13622242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 614 - 755
Target Start/End: Original strand, 28712732 - 28712873
Alignment:
| Q |
614 |
cggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatc |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28712732 |
cggaaagaaggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatc |
28712831 |
T |
|
| Q |
714 |
caattaagtccgtagcgtctaccaatttcgccatatcccccg |
755 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28712832 |
caattaagtccgtagcgtctaccaattccgccatatcccccg |
28712873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 459 - 572
Target Start/End: Original strand, 28712577 - 28712690
Alignment:
| Q |
459 |
catcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagt |
558 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28712577 |
catcaaactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatattgtcaactccatttgttagaacagcttccattgagt |
28712676 |
T |
|
| Q |
559 |
ctctgcacctatcc |
572 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28712677 |
ctctgcacctatcc |
28712690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 623 - 753
Target Start/End: Complemental strand, 246954 - 246824
Alignment:
| Q |
623 |
ggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatccaattaagt |
722 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
246954 |
ggatttggctcaggattgcccttttttaattccagggtttctctgaatttgaaagttttcacctggtaagtttccataccaaggctcaatacaatcaagt |
246855 |
T |
|
| Q |
723 |
ccgtagcgtctaccaatttcgccatatcccc |
753 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
246854 |
ccgtagcgtctaccgatttcgccatatcccc |
246824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 247478 - 247350
Alignment:
| Q |
314 |
tttggggatagagggactcgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaatttcattgatgtcggtattgacatgtagaatggg |
413 |
Q |
| |
|
|||||||||||||||||| |||||||||| | || ||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
247478 |
tttggggatagagggacttgaaccctcacaacttaaaaagtcgacggattttccttttactagaaatttcattgttgtcagtattgacatgtagaatggg |
247379 |
T |
|
| Q |
414 |
actctatctttattctcgtctgattaatc |
442 |
Q |
| |
|
||||| ||||| | |||||| |||||||| |
|
|
| T |
247378 |
actctctctttgtcctcgtccgattaatc |
247350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 247864 - 247801
Alignment:
| Q |
142 |
ggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccagctgagctatcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
247864 |
ggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccaactgagctatcc |
247801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 247042 - 246997
Alignment:
| Q |
527 |
aactccatttgttagaacagcttccattgagtctctgcacctatcc |
572 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
247042 |
aactcgattcgttagaacagcttccattgagtctctgcacctatcc |
246997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 41244927 - 41245103
Alignment:
| Q |
137 |
cgccgggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccagctgagctatcccatccattcatgacacaccaccctaaattta |
236 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||| |||||||||| | ||| |||| |
|
|
| T |
41244927 |
cgccgggaatcagatttgaactggtgacacgaggattttcaatcctctactgtaccagctgagctatcccgatcattcttgacacaccatcttaatttta |
41245026 |
T |
|
| Q |
237 |
ggaaatttcttaagtctatgtcaactaaagnnnnnnnnnngggatataggataaaaaattagcgaattaaatgggct |
313 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41245027 |
ggaaattacttgagtctatgtcaactaaataaaaaaaaaagggatataggataaaaaattagcgaattaaatgggct |
41245103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 679
Target Start/End: Complemental strand, 32859342 - 32859297
Alignment:
| Q |
634 |
aggattgcccatttttaattccagggtttctctgaatttgaaagtt |
679 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
32859342 |
aggattgcccattgtgaattccagggtttctctgaattggaaagtt |
32859297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 634 - 755
Target Start/End: Complemental strand, 14167 - 14048
Alignment:
| Q |
634 |
aggattgcccatttttaattccagggtttctctgaatttgaaagttttcacttggtaagtttccataccaaggctcaatccaattaagtccgtagcgtct |
733 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14167 |
aggattgcccatttt-aattcaaga-tttctctgaatttgaaagtttttatttggcaagtttccataccaaggctcaatccaattaagtctgtagcgtct |
14070 |
T |
|
| Q |
734 |
accaatttcgccatatcccccg |
755 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14069 |
accaatttcgccatatcccccg |
14048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 678 - 750
Target Start/End: Original strand, 11112507 - 11112579
Alignment:
| Q |
678 |
ttttcacttggtaagtttccataccaaggctcaatccaattaagtccgtagcgtctaccaatttcgccatatc |
750 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
11112507 |
ttttcacttggtaagtttccatgccaaagctcaatccaattaagcctgtagtgtctaccaatttcgccatatc |
11112579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 622 - 681
Target Start/End: Original strand, 13371074 - 13371133
Alignment:
| Q |
622 |
aggatttggctcaggattgcccatttttaattccagggtttctctgaatttgaaagtttt |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
13371074 |
aggatttggctcaggattgcccatttttaatttgagggtttctctaaatttgaaagtttt |
13371133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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