View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_131 (Length: 268)
Name: NF8889_low_131
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_131 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 49148 - 49354
Alignment:
| Q |
26 |
ttcacgtgaaaaacactatctccaataacaccaagaataatagtaataataaagatgatgaagaagatgaagaagacgacgaagataacatggatgttga |
125 |
Q |
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| T |
49148 |
ttcacgtgaaaaacactatctccaatgacaccaagaataatagtaataataaagatgatgaagaagatgaagaagaagacgaagataacatggatgttga |
49247 |
T |
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| Q |
126 |
actcgctaagtttcgtgctgttggtgatcctcacaaaatggccaagatgcagtttgttactaatttcattcttttcttcaattatatgttatttttcata |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
49248 |
actcgctaagtttcgtgctgttggtgatcctcacaaaatggccaagatgcagtttgttactaatttcattctttttctcaattttatgttatttttcata |
49347 |
T |
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| Q |
226 |
tcatatg |
232 |
Q |
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||||||| |
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| T |
49348 |
tcatatg |
49354 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 17814920 - 17815014
Alignment:
| Q |
82 |
gatgaagaagatgaagaagacgacgaagataacatggatgttgaactcgctaagtttcgtgctgttggtgatcctcacaaaatggccaagatgcagtt |
179 |
Q |
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|||||||||||||| ||||| || |||||| |||||||||||||| |||||||||| | ||| |||||| ||||| |||||||| ||||||||||| |
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| T |
17814920 |
gatgaagaagatgatgaagaaga---agataatatggatgttgaacttgctaagtttcctactgctggtgaccctcataaaatggctaagatgcagtt |
17815014 |
T |
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