View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_137 (Length: 261)

Name: NF8889_low_137
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_137
NF8889_low_137
[»] chr7 (12 HSPs)
chr7 (1-246)||(321780-322025)
chr7 (29-188)||(1012161-1012321)
chr7 (157-241)||(28369273-28369357)
chr7 (157-242)||(38609281-38609367)
chr7 (157-242)||(23839292-23839376)
chr7 (157-242)||(3120817-3120903)
chr7 (157-242)||(5578953-5579042)
chr7 (166-242)||(22797523-22797598)
chr7 (157-190)||(7553534-7553567)
chr7 (157-218)||(39894794-39894855)
chr7 (158-213)||(7932285-7932339)
chr7 (161-203)||(29907213-29907255)
[»] chr4 (16 HSPs)
chr4 (9-242)||(37078841-37079074)
chr4 (99-239)||(47442115-47442255)
chr4 (157-242)||(39437173-39437257)
chr4 (157-242)||(41223928-41224013)
chr4 (157-239)||(37078261-37078342)
chr4 (157-242)||(28501922-28502004)
chr4 (157-210)||(32476714-32476767)
chr4 (157-232)||(44897997-44898072)
chr4 (157-242)||(49529487-49529569)
chr4 (157-232)||(16184705-16184780)
chr4 (157-206)||(13188076-13188125)
chr4 (157-242)||(50853897-50853982)
chr4 (159-242)||(50848214-50848298)
chr4 (157-242)||(22383977-22384057)
chr4 (157-213)||(6678556-6678612)
chr4 (157-201)||(34249628-34249672)
[»] chr8 (12 HSPs)
chr8 (9-240)||(8472518-8472751)
chr8 (49-242)||(32593404-32593599)
chr8 (157-242)||(7066210-7066295)
chr8 (32-170)||(20075508-20075648)
chr8 (157-238)||(8471891-8471972)
chr8 (157-242)||(32690297-32690382)
chr8 (157-239)||(33493891-33493975)
chr8 (48-190)||(541744-541887)
chr8 (157-240)||(33085282-33085365)
chr8 (157-242)||(18471266-18471351)
chr8 (157-242)||(32051694-32051779)
chr8 (157-235)||(8194357-8194435)
[»] chr5 (7 HSPs)
chr5 (20-242)||(4446242-4446466)
chr5 (160-242)||(7518858-7518940)
chr5 (157-242)||(27828416-27828501)
chr5 (157-242)||(43432179-43432264)
chr5 (157-240)||(23498381-23498464)
chr5 (178-242)||(27827608-27827672)
chr5 (109-167)||(22160463-22160523)
[»] chr2 (14 HSPs)
chr2 (157-242)||(23220958-23221043)
chr2 (157-242)||(17625741-17625827)
chr2 (157-242)||(17670128-17670214)
chr2 (157-242)||(2007165-2007250)
chr2 (158-240)||(13220138-13220220)
chr2 (156-242)||(14931964-14932050)
chr2 (156-242)||(24201231-24201316)
chr2 (158-232)||(33896840-33896914)
chr2 (161-229)||(3304549-3304617)
chr2 (157-208)||(38500599-38500650)
chr2 (157-242)||(25432786-25432870)
chr2 (157-228)||(11493767-11493838)
chr2 (180-242)||(35942137-35942199)
chr2 (109-167)||(817067-817127)
[»] chr1 (7 HSPs)
chr1 (157-242)||(25104811-25104895)
chr1 (161-239)||(46859659-46859737)
chr1 (157-242)||(32755005-32755090)
chr1 (157-242)||(45395795-45395879)
chr1 (161-242)||(37827844-37827925)
chr1 (157-239)||(14613883-14613964)
chr1 (157-206)||(19972601-19972650)
[»] chr3 (8 HSPs)
chr3 (157-242)||(20269952-20270037)
chr3 (157-242)||(48596867-48596952)
chr3 (161-242)||(26218770-26218851)
chr3 (159-240)||(28767629-28767710)
chr3 (170-246)||(44399634-44399709)
chr3 (146-239)||(109637-109729)
chr3 (157-213)||(46143445-46143501)
chr3 (170-242)||(55242339-55242411)
[»] chr6 (3 HSPs)
chr6 (159-240)||(15869445-15869526)
chr6 (109-205)||(19314508-19314608)
chr6 (109-167)||(20592048-20592108)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 321780 - 322025
Alignment:
Q  1 ctgaggcgttttcatcatttggtgacttggtgactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  321780 ctgaggcgttttcatcatttggtgacttggtgactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaatt 321879  T
Q  101 ttgatttgttgtaacaagcttggtgcatgtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaact 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  321880 ttgagttgttgtaacaagcttggtgcatgtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaact 321979  T
Q  201 tcctagattgattattatcactcctagagtattcaacttcctgggt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  321980 tcctagattgattattatcactcctagagtattcaacttcctgggt 322025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 1012161 - 1012321
Alignment:
Q  29 ggtgactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgcat 128  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| | || | ||| ||||||||||||||||||||||||||||||    
T  1012161 ggtgactatactcacatagatgattatcaatggtgcattctcttcccat-gatgatcactcgatggtgatttttgatttgttgtaacaagcttggtgcat 1012259  T
Q  129 --gtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattccttt 188  Q
      |||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||    
T  1012260 atgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatctttagatatcccttt 1012321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 28369273 - 28369357
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcc 241  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||   || ||||||||||||| ||||||||    
T  28369273 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttcc 28369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 38609281 - 38609367
Alignment:
Q  157 tgttaaaattaagaatctttagatattcc-tttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||| |||| ||||||||||||| |||||||||    
T  38609281 tgttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcct 38609367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 23839292 - 23839376
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  23839292 tgttaaagttaagaatctttagatattcctttgattatacaacttcctagattgatt-gtataactcctagagtatttaacttcct 23839376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 3120903 - 3120817
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcct-agagtattcaacttcct 242  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||| | || |||| | ||||| |||||||||||    
T  3120903 tgttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcattactcttaagagtgttcaacttcct 3120817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 5578953 - 5579042
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatac----aacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||||||||||||| |  ||     |||||||||||||||| |||| ||| ||||||||| |||||||||    
T  5578953 tgttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcct 5579042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 22797523 - 22797598
Alignment:
Q  166 taagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||| |||||   ||||||| |||||||||||| |||| || |||||||||| |||||||||    
T  22797523 taagaatctttagatattc-tttaatggtacaactccctagattgattgttattacccctagagtatacaacttcct 22797598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 7553534 - 7553567
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaa 190  Q
    ||||||||||||||||||||||||||||||||||    
T  7553534 tgttaaaattaagaatctttagatattcctttaa 7553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 39894794 - 39894855
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattat 218  Q
    ||||||||||||||||||| |||||||||||||| | || ||||||||  ||||||| ||||    
T  39894794 tgttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgttat 39894855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 7932285 - 7932339
Alignment:
Q  158 gttaaaattaagaatctttagatattcctttaactatacaacttcctagattgatt 213  Q
    |||||||||||||| ||  |||||||||||||| | ||||||||||||||||||||    
T  7932285 gttaaaattaagaa-ctacagatattcctttaattgtacaacttcctagattgatt 7932339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 29907213 - 29907255
Alignment:
Q  161 aaaattaagaatctttagatattcctttaactatacaacttcc 203  Q
    |||||||| ||||||||||||||||||||| | ||||||||||    
T  29907213 aaaattaaaaatctttagatattcctttaattgtacaacttcc 29907255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 37078841 - 37079074
Alignment:
Q  9 ttttcatcatttggtgacttggtgactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttg 108  Q
    ||||||||||||||||||| || |||||||||| || |  ||||||| || ||||||||||||||| |||||||||||||||| | ||| |||||||| |    
T  37078841 ttttcatcatttggtgactcgg-gactatattcccacatttgattattaacggtgcattctcttcctgttgatgatcatttgatggtgacttttgattag 37078939  T
Q  109 ttgtaacaagcttggtgcat--gtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctag 206  Q
    ||||||||||||||||  ||  |||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  37078940 ttgtaacaagcttggtttatatgtcatgtatgctacagcttgaggaggggtgttaaagttaagaatctttagatatccctttaactgtacaacttcctag 37079039  T
Q  207 attgattattatcactcctagagtattcaacttcct 242  Q
    |||||||  ||| |||||||||||||||||||||||    
T  37079040 attgatt-gtataactcctagagtattcaacttcct 37079074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 47442255 - 47442115
Alignment:
Q  99 ttttgatttgttgtaacaagcttggtgcatgtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaa 198  Q
    ||||| ||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||||  |||||||| | | || ||    
T  47442255 ttttgttttgttgtaacaagcttggagcatgtcatgtatgatccagcttgaggagcgctgttaaaattaagaatctttaggaattcctttcattctataa 47442156  T
Q  199 cttcctagattgattattatcactcctagagtattcaactt 239  Q
    |||||||| |||||  |||| ||||||||||||| ||||||    
T  47442155 cttcctagtttgatagttattactcctagagtatacaactt 47442115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 39437173 - 39437257
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||| ||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  39437173 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcct 39437257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 41223928 - 41224013
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||| ||||||| |||||||||    
T  41223928 tgttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcct 41224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 37078261 - 37078342
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 239  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  37078261 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgatt-gtataactcctagagtattcaactt 37078342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 28502004 - 28501922
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| | || |||||||   |||||||||||||    
T  28502004 tgttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactccta---tattcaacttcct 28501922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 32476767 - 32476714
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattg 210  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  32476767 tgttaaaattaagaatctttagatattcctttaactttataacttcctagattg 32476714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 44898072 - 44897997
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtat 232  Q
    |||| |||||||||||||||| |||||||||||| | |||||||||| ||||||||| |||| ||||| |||||||    
T  44898072 tgttgaaattaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtat 44897997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 49529487 - 49529569
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| ||||||||||||||||   ||||||| | |||||||||||||||||||| | || |||||||||||||||||||||||    
T  49529487 tgttaaagttaagaatctttagatc--cctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcct 49529569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 16184705 - 16184780
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtat 232  Q
    |||||||| ||||||||||||||||||| ||||| | ||||||||||| || ||||| |||| | |||||||||||    
T  16184705 tgttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtat 16184780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 13188076 - 13188125
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctag 206  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  13188076 tgttaaaattaagtatctttagatattcctttaattgtacaacttcctag 13188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 50853897 - 50853982
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||| |||| |||||||||||||| | |||||| | ||||||||||| |||| ||||| | | ||| |||||||||    
T  50853897 tgttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcccacaatatacaacttcct 50853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 50848298 - 50848214
Alignment:
Q  159 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcact-cctagagtattcaacttcct 242  Q
    ||||| |||||||||||||||||||| ||||| ||| | ||||||||||||||||   || ||| || |||||||||||||||||    
T  50848298 ttaaagttaagaatctttagatattcgtttaattattctacttcctagattgattgcgattactcccaagagtattcaacttcct 50848214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 22383977 - 22384057
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||||||||||||||     | ||||||||| |||||||||| |||| | ||||| ||||| ||| |||||    
T  22383977 tgttaaaattaagaatctttagatattcct-----tgtacaacttcttagattgattgttattattcctatagtatacaatttcct 22384057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 6678556 - 6678612
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgatt 213  Q
    ||||||||||||||||||||  ||||| |||||| | || ||||| |||||||||||    
T  6678556 tgttaaaattaagaatctttcaatatttctttaattgtataactttctagattgatt 6678612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 34249672 - 34249628
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaactt 201  Q
    ||||||||||||||||| |||||||||||| ||| | ||||||||    
T  34249672 tgttaaaattaagaatccttagatattcctataattgtacaactt 34249628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 8472518 - 8472751
Alignment:
Q  9 ttttcatcatttggtgacttggtgactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttg 108  Q
    ||||||||||||||||||| ||||||||||||| || |  ||||||| || |||||||| ||| ||  ||||||||||||||| | ||| |||||||| |    
T  8472518 ttttcatcatttggtgactcggtgactatattcccacatttgattattaacggtgcattttctaccttttgatgatcatttgatggtgacttttgattag 8472617  T
Q  109 ttgtaacaagcttggtgcat--gtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctag 206  Q
    ||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| | |||||||||||||    
T  8472618 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatctttagatatccctttaattgtacaacttcctag 8472717  T
Q  207 attgattattatcactcctagagtattcaacttc 240  Q
    |||| || |||| ||||| |||||||||||||||    
T  8472718 attggttgttattactccaagagtattcaacttc 8472751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 32593404 - 32593599
Alignment:
Q  49 tgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgca--tgtcatgtatgcttcagct 146  Q
    ||||||| |||||||| |||||||||| |||||||||| |||| | ||| || || ||| |||||||||||||||||||  ||||||| ||| | |||||    
T  32593404 tgattattaatggtgccttctcttcccattgatgatcacttgatggtgacttgtgttttcttgtaacaagcttggtgcacatgtcatgcatgttccagct 32593503  T
Q  147 tgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| | |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||   ||||||||||||| |||||||||    
T  32593504 tgaggagaggtgttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcct 32593599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 7066295 - 7066210
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||||||||||    
T  7066295 tgttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcct 7066210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 20075508 - 20075648
Alignment:
Q  32 gactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatcat-ttgacgttgaattttgatttgttgtaacaagcttggtgc--at 128  Q
    |||||||||| || |||||||||| |||||||| ||||||||| |||||||||||| |||| | ||| ||||| ||||||||||||||||  ||||  ||    
T  20075508 gactatattcccacagatgattattaatggtgccttctcttccggttgatgatcatcttgatggtgacttttgttttgttgtaacaagctgtgtgcatat 20075607  T
Q  129 gtcatgtatgcttcagcttgaggagggatgttaaaattaaga 170  Q
    |||||||||||| |||||||||| ||| | ||||||||||||    
T  20075608 gtcatgtatgctccagcttgagg-ggggtattaaaattaaga 20075648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 8471891 - 8471972
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaact 238  Q
    ||||||| |||||||||||||||||| ||||||| | |||||||||||||||||||| |||| |||| ||||||||||||||    
T  8471891 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaact 8471972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 32690382 - 32690297
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||||||| |||||||||| | || |||||||||| |||||| |||| ||||||||||||| |||||||||    
T  32690382 tgttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcct 32690297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 33493975 - 33493891
Alignment:
Q  157 tgttaaaattaagaatctttagatat--tcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 239  Q
    ||||||||||||||||||||||||||  |||||||| | |||||||||||||||||| | |||| ||||||||||||||||||||    
T  33493975 tgttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactt 33493891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 541887 - 541744
Alignment:
Q  48 atgattatcaatggtgcattctcttcccgttgatgatcat-ttgacgttgaattttgatttgttgtaacaagcttggtgc--atgtcatgtatgcttcag 144  Q
    |||||| | |||||| | |||||| | | ||||||||||| |||| | ||| ||||| ||||||||||||||||||||||  ||||||  |||||| |||    
T  541887 atgatttttaatggtcctttctctactcattgatgatcatcttgatggtgacttttgttttgttgtaacaagcttggtgcttatgtcagatatgctccag 541788  T
Q  145 cttgaggagggatgttaaaattaagaatctttagatattcctttaa 190  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  541787 cttgaggaggggtgttaaaattaagaa--cttagatattcctttaa 541744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 33085282 - 33085365
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 240  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||  ||| |||||||| |||| |||||||    
T  33085282 tgttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctagggtatacaacttc 33085365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 18471351 - 18471266
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||| |||||||| || ||||||||| | |||||||||||||||||||| |||| ||| ||| ||||| |||||||||    
T  18471351 tgttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttcct 18471266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 32051779 - 32051694
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||| ||||||||||||   |||||||||  ||||||||||| |||| |||| |||| ||| |||||||||    
T  32051779 tgttaaaattaagaatcttcagatattcctttggttatacaactctctagattgatttttattactcttagactatacaacttcct 32051694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 8194357 - 8194435
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattca 235  Q
    ||||||| |||||| ||||||| ||||| ||||| | ||| |||||||||||||||| |||| |||||| |||||||||    
T  8194357 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca 8194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 4446242 - 4446466
Alignment:
Q  20 tggtgacttggtgactatattcacatagatgattatcaatggtgcattctcttcccgttgatgatca-tttgacgttgaattttgatttgttgtaacaag 118  Q
    |||| ||| |||||||||| || || |||||||||| |||||||| |||| |||||||||||||||| ||||| |  || ||||||||||||||||||||    
T  4446242 tggttactcggtgactatactcccacagatgattattaatggtgccttcttttcccgttgatgatcactttgatggcgacttttgatttgttgtaacaag 4446341  T
Q  119 cttggtgcat--gtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattatt 216  Q
    ||||||||||  |||||||||||| |||||||||||||| ||||||| |||||||| ||||||||| ||||||| | ||||||||||||||||||||  |    
T  4446342 cttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgatt-gt 4446440  T
Q  217 atcactcctagagtattcaacttcct 242  Q
    || |||||||||||||||||||||||    
T  4446441 ataactcctagagtattcaacttcct 4446466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 7518858 - 7518940
Alignment:
Q  160 taaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||| |||||||||    
T  7518858 taaaattaagcatctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcct 7518940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 27828501 - 27828416
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||| |||| ||||||||| ||| |||||||||    
T  27828501 tgttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcct 27828416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 43432264 - 43432179
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||| | |||||||||||| | ||||||||| |||||||||| |||| | ||||| ||||| |||||||||    
T  43432264 tgttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcct 43432179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 23498464 - 23498381
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 240  Q
    |||| ||||||||||||||||||| ||||||||| | ||| ||||||||||||||||  ||| |||||| | |||| |||||||    
T  23498464 tgttgaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctggggtatacaacttc 23498381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 27827672 - 27827608
Alignment:
Q  178 gatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||| |||| | ||||||||||||||||| || |||| ||||||||||||| |||||||||    
T  27827672 gatattcccttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcct 27827608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 22160523 - 22160463
Alignment:
Q  109 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaatta 167  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||||  ||||| |||||    
T  22160523 ttgtaacaagcttggtgtatatgacatgtatgcttcagcttgaggaggagtgttagaatta 22160463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 23220958 - 23221043
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  23220958 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcct 23221043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 17625741 - 17625827
Alignment:
Q  157 tgttaaaa-ttaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  17625741 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcct 17625827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 17670128 - 17670214
Alignment:
Q  157 tgttaaaa-ttaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  17670128 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcct 17670214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 2007250 - 2007165
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||| ||||| ||| |||||    
T  2007250 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcct 2007165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 13220220 - 13220138
Alignment:
Q  158 gttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 240  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| || ||| |||| ||||||||||||| |||||||    
T  13220220 gttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttc 13220138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 14932050 - 14931964
Alignment:
Q  156 atgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| |||| ||||||||||||| || ||||||    
T  14932050 atgttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcct 14931964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 24201231 - 24201316
Alignment:
Q  156 atgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  24201231 atgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-gtataactcctagagtattcaacttcct 24201316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 33896914 - 33896840
Alignment:
Q  158 gttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtat 232  Q
    ||||||||||||||||| ||||||||||||||| | |||| |||||||||||||||||| | ||| |||||||||    
T  33896914 gttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtat 33896840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 3304549 - 3304617
Alignment:
Q  161 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagag 229  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||||||||| |||| ||||||||||    
T  3304549 aaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcctagag 3304617  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 38500599 - 38500650
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagat 208  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  38500599 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagat 38500650  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 25432870 - 25432786
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||| || ||||| || ||||||||| | |||||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  25432870 tgttaaaattaaaaa-ctttatatgttcctttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcct 25432786  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 11493767 - 11493838
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctaga 228  Q
    ||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||  || |||| |||||||||    
T  11493767 tgttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctaga 11493838  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 35942199 - 35942137
Alignment:
Q  180 tattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||| ||| |||||||||||||||||||||||| |||| | ||||||||||  |||||||||    
T  35942199 tattcttttcactatacaacttcctagattgattgttattattcctagagtaaacaacttcct 35942137  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 817127 - 817067
Alignment:
Q  109 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaatta 167  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||  ||||| |||||    
T  817127 ttgtaacaagcttggtgcatatgacatgtatgcttcagcttgaggaggagtgttagaatta 817067  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 25104895 - 25104811
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  25104895 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatta-tataactcctagagtattcaacttcct 25104811  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 46859737 - 46859659
Alignment:
Q  161 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 239  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||| || | ||||||||||||| ||||||    
T  46859737 aaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactt 46859659  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 32755090 - 32755005
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||||||||||||||| |||||||||| ||| | || ||||||||||||||||| |||| ||||||||||||| |||||||||    
T  32755090 tgttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttcct 32755005  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 45395795 - 45395879
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||  ||| |||||||||||||||||||||||    
T  45395795 tgttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgatt-gtataactcctagagtattcaacttcct 45395879  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 37827844 - 37827925
Alignment:
Q  161 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |||| ||||||| | ||| |||||||||    
T  37827844 aaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcct 37827925  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 14613883 - 14613964
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 239  Q
    ||||||| |||||||||||||||||| ||||||| | ||||||||  ||||||||||  ||| ||||||||||||||||||||    
T  14613883 tgttaaagttaagaatctttagatatccctttaattgtacaactttttagattgatt-gtataactcctagagtattcaactt 14613964  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 19972650 - 19972601
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctag 206  Q
    ||||||||||||||||||| ||| |||||||||| | |||||||||||||    
T  19972650 tgttaaaattaagaatcttcagaaattcctttaattgtacaacttcctag 19972601  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 20270037 - 20269952
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||| ||||||| | ||| |||||||||    
T  20270037 tgttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttcct 20269952  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 48596952 - 48596867
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| |||| |||||||||||||  ||||||||    
T  48596952 tgttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtataaaacttcct 48596867  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 26218770 - 26218851
Alignment:
Q  161 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    |||||||||||||||||||||||||||||| | || |||||| |||||||||| |||| | ||||||| ||| |||| ||||    
T  26218770 aaaattaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatcct 26218851  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 28767710 - 28767629
Alignment:
Q  159 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 240  Q
    |||||||||| |||||||| |||||| ||||| | |||||||||||||||||||| |||| ||  ||||||||| |||||||    
T  28767710 ttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattacaactagagtatacaacttc 28767629  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 44399709 - 44399634
Alignment:
Q  170 aatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggt 246  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||   | ||||||||| |||||||||||||    
T  44399709 aatctgtagatattcctttaattatacaacttcctagattgattgttat-ttttctagagtatacaacttcctgggt 44399634  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 109729 - 109637
Alignment:
Q  146 ttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 239  Q
    |||||||||| ||||||  |||| |||||||||||||| |||||| | |||||||| ||||||||||| |||| ||| || | |||| ||||||    
T  109729 ttgaggaggggtgttaag-ttaaaaatctttagatattactttaattgtacaactttctagattgattgttattacttctcgcgtatacaactt 109637  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 46143445 - 46143501
Alignment:
Q  157 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgatt 213  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||  ||||| |||||    
T  46143445 tgttaaatttaagaatcgttagatattcctttaattatacaactctctagactgatt 46143501  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 55242339 - 55242411
Alignment:
Q  170 aatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 242  Q
    ||||| ||| ||||||||||| | |||||||||||||||||||| |||  |  |||||||||| |||||||||    
T  55242339 aatctgtagttattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttcct 55242411  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 15869526 - 15869445
Alignment:
Q  159 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 240  Q
    |||||||||||||||||||||||||||||| |   ||||||| |||||||||||| |||| ||||||||||||| |||||||    
T  15869526 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 15869445  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 19314508 - 19314608
Alignment:
Q  109 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaattaag--aatctttagatattcctttaactatacaacttcct 204  Q
    |||| ||||||||||||||| |  || ||||||| |||||||||||||  ||||| |||||||  |||||||  | |||||||||| | |||||||||||    
T  19314508 ttgttacaagcttggtgcatatgacaagtatgctccagcttgaggaggagtgttagaattaagtaaatctttcaaaattcctttaattgtacaacttcct 19314607  T
Q  205 a 205  Q
    |    
T  19314608 a 19314608  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 20592108 - 20592048
Alignment:
Q  109 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaatta 167  Q
    |||||||||||||||||||| |  |||||||||| |||||||||||||  ||||| |||||    
T  20592108 ttgtaacaagcttggtgcatatgacatgtatgctccagcttgaggaggagtgttagaatta 20592048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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