View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_14 (Length: 773)
Name: NF8889_low_14
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 25 - 596
Target Start/End: Original strand, 14379777 - 14380348
Alignment:
| Q |
25 |
gcagcaactatttgacgaacttctactaattagagttttggtaaatttacaactcaacaaacttcggatgcgagaaataaaatcaacctacataaccaaa |
124 |
Q |
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| T |
14379777 |
gcagcaactatttgaccaacttctactaattagagttttggtcaatttacaactcaacaaacttcggatgcgagaaataaaatcaacctatataaccaaa |
14379876 |
T |
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| Q |
125 |
catgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggt |
224 |
Q |
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| T |
14379877 |
catgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggt |
14379976 |
T |
|
| Q |
225 |
gagtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggtagtgagt |
324 |
Q |
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| T |
14379977 |
gagtaagaaaactcaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggtagtgagt |
14380076 |
T |
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| Q |
325 |
aaacgatgctgcaaaaaaccactgcaatcagagataaataactaatatattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaa |
424 |
Q |
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| T |
14380077 |
aaacgatgctgcaaaaaaccactgcaatcagagataaataactaatatattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaa |
14380176 |
T |
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| Q |
425 |
gactcgagagtatgttcaaattgatggtatagtattgaaccaatgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcat |
524 |
Q |
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| T |
14380177 |
gactcgagagtatgttcaaattgatggtatagtgtggaaccagtgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcat |
14380276 |
T |
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| Q |
525 |
tttactacattccgccctatgtaagcaattcaaatgtatcctaaaatatatgaatttccaaaacacgatgga |
596 |
Q |
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| T |
14380277 |
tctactacattccgccctatgtaagcaattcaaatgtatcctaaaatacatgaatttccaaaacacgatgga |
14380348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 596 - 764
Target Start/End: Original strand, 14393194 - 14393362
Alignment:
| Q |
596 |
aggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggt |
695 |
Q |
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| T |
14393194 |
aggagatggaatgtcattgccattttctgaatgatttttgctaagcttgaaaccatcggcaaaacatgttcccccagattttggaagtgaagctgaaggt |
14393293 |
T |
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| Q |
696 |
atatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgt |
764 |
Q |
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| T |
14393294 |
atatttcgacaattcattgtaattacaattctgtatgtttaactattttcttagtcttgatgttgatgt |
14393362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 28 - 326
Target Start/End: Complemental strand, 14246463 - 14246164
Alignment:
| Q |
28 |
gcaactatttgacgaacttctactaattagagttttggtaaatttacaactcaacaaacttcgg-atgcgagaaataaaatcaacctacataaccaaaca |
126 |
Q |
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|||||||||||| ||||||| ||||||||||||||| |||||||| |||| | || | || | ||| ||||| ||||||| ||||||||||||| |
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| T |
14246463 |
gcaactatttgatctacttctattaattagagttttggagaatttacagctcagcggacattggcacacgaaaaatacaatcaactcacataaccaaaca |
14246364 |
T |
|
| Q |
127 |
tgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggtga |
226 |
Q |
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| T |
14246363 |
tgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacataaatggggcaaacatcgtaattgtcgtattcaaggtga |
14246264 |
T |
|
| Q |
227 |
gtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggtagtgagtaa |
326 |
Q |
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| T |
14246263 |
gtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattgagctctggcgagaggtaatgagtaa |
14246164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 332 - 526
Target Start/End: Complemental strand, 14246122 - 14245927
Alignment:
| Q |
332 |
gctgcaaaaaaccactgcaatcagagataaataact-aatat-attttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactc |
429 |
Q |
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||||||||||||| | | ||||||||| |||||||| ||||| ||||||||||||||||| ||| |||||||||| ||||| ||||||| | ||||||| |
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| T |
14246122 |
gctgcaaaaaaccgccggaatcagagacaaataactcaatattattttcctaagcaagggctaataattgtgtaatctcacaacccattatc-aagactc |
14246024 |
T |
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| Q |
430 |
gagagtatgttcaaattgatggtatagtattgaaccaatgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattt |
526 |
Q |
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| T |
14246023 |
aagagtatgtttaaactgatggtatagtgtgaaattagtgaaatgaagtgagataatatccatttttcaaatctaaaaaacatattccatttcattt |
14245927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 712 - 756
Target Start/End: Complemental strand, 14358346 - 14358302
Alignment:
| Q |
712 |
ttgtaattacaattctgtatgtttaactattttcttagtcttgat |
756 |
Q |
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| T |
14358346 |
ttgtaattacaattctgtatgtttaaatatttctttagtcttgat |
14358302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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