View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_142 (Length: 254)
Name: NF8889_low_142
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_142 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 39906509 - 39906746
Alignment:
| Q |
17 |
atttaatttatattatccacgtcacaccaaacatgtacagcttaatggtataatatagcctctttatgtcaccgacctggagaacataactgctttgctg |
116 |
Q |
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| T |
39906509 |
atttaatttatattatccacgtcacaccaaacatgtacagcttaatggtataatatagcctctttatgtcaccgacctggagaacataagtgctttgctg |
39906608 |
T |
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| Q |
117 |
gcttaaaatacaatatattcttcctagcatggatttgttaattcggaccaagatacataattagatgttttgtttttcagagttggtcaatttaaggtct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39906609 |
gcttaaaatacaatatattcttcctagcatggatttgttaattcggaccaagatacataattagatgttttgtttttcagagttggtcaatttaaggtct |
39906708 |
T |
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| Q |
217 |
cgatgattaaaaaataactaggcaaagctgtcccaaat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39906709 |
cgatgattaaaaaataactaggcaaagctgtcccaaat |
39906746 |
T |
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