View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_150 (Length: 241)
Name: NF8889_low_150
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_150 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5160412 - 5160172
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160412 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
5160313 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaaca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160312 |
aaattgttgtttgatatatccaaataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaaca |
5160213 |
T |
|
| Q |
201 |
tcaaattgtattgataagaaagaaaagtaggaatgacactt |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160212 |
tcaaattgtattgataagaaagaaaagtaggaatgacactt |
5160172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5182657 - 5182419
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||||| | ||| |||||||| ||||| ||||| |
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| T |
5182657 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagcaaaccactc |
5182558 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaaca |
200 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||| ||||||| ||||||| ||| ||||||| || | |
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| T |
5182557 |
aaattgttgtttgatatatccaaataattcatgttatgattatctatcaaccaacttgggaatgaaccaactaaattgtttctggagaggtccaagaata |
5182458 |
T |
|
| Q |
201 |
tcaaattgtattgataagaaagaaaagtaggaatgacac |
239 |
Q |
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||||||| |||||||| |||||||||||||||||||||| |
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| T |
5182457 |
tcaaattatattgatatgaaagaaaagtaggaatgacac |
5182419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 4856686 - 4856914
Alignment:
| Q |
13 |
tatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgttt |
112 |
Q |
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||||||||||||||||||||||||||||| |||||| | ||| |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||| |
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| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
|
| Q |
113 |
gatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtatt |
212 |
Q |
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|||||||||| |||||| ||||||||||||| ||||||| |||||||| |||| ||||||| ||||||| ||| ||||||| || | |||||| |||| |
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| T |
4856786 |
gatatatccaaataattcatgttatgattatctatcaacgaacttgggaatgaaccaactaaattgtttctggagaggtccaagaataccaaattatatt |
4856885 |
T |
|
| Q |
213 |
gataagaaagaaaagtaggaatgacactt |
241 |
Q |
| |
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|||| |||||||||||||||||||||||| |
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| T |
4856886 |
gatatgaaagaaaagtaggaatgacactt |
4856914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5173322 - 5173088
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||| || || ||||| ||||| |
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| T |
5173322 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatacttggaaggaatatatc------ttctggaagcaaaccacta |
5173229 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaaca |
200 |
Q |
| |
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|||||||||||||||| ||||| ||| | ||| || ||||| |||||||||||||||| ||||||||| || ||||| | || ||||||| || | |
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| T |
5173228 |
aaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaatattgttgctagagaggtccatcagta |
5173129 |
T |
|
| Q |
201 |
tcaaattgtattgataagaaagaaaagtaggaatgacactt |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5173128 |
tcaaattatattgataagaaagaaaagtaggaatgacactt |
5173088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5196057 - 5195814
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| || | |||||||||| | | | |||||||| ||||| ||||| |
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| T |
5196057 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagcaaaccactc |
5195958 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaacca---acttggggatgagccaactattttgtttccggaaaggtccacca |
197 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||| || ||||||||||||||| ||||||| ||||||| ||| ||||| | ||| ||| ||| |
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| T |
5195957 |
aaattgttgtttgatatatccaaatatatcatgtcatcattatgtatcaaccaattacttgggagtgagccatttatattgttgctggagaggaccaagt |
5195858 |
T |
|
| Q |
198 |
acatcaaattgtattgataagaaagaaaagtaggaatgacactt |
241 |
Q |
| |
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| | |||||| |||||||| |||||||||||||||||||||||| |
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| T |
5195857 |
ataccaaattatattgatatgaaagaaaagtaggaatgacactt |
5195814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4842200 - 4842437
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| ||||| || ||||| ||||| |
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| T |
4842200 |
aattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctggaagcaaaccacta |
4842299 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaaca |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||| | ||||| |||||||||||||||| ||||||| || ||||| | || ||||||| || | |
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| T |
4842300 |
aaattgttgtttgatagatccaaatattgtatgccaacattatttatcaaccaacttgggagtgagcca---atattgttgctagagaggtccatcacta |
4842396 |
T |
|
| Q |
201 |
tcaaattgtattgataagaaagaaaagtaggaatgacactt |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4842397 |
tcaaattatattgataagaaagaaaagtaggaatgacactt |
4842437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5214214 - 5213977
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| |||||||| || || |||||| |
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| T |
5214214 |
aattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttggaagaaaaccactt |
5214115 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaaca |
200 |
Q |
| |
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||| ||||| |||||||||||| ||| || | || | |||||| ||||| |||||| || | ||||| | |||||| | ||| ||||||| ||| | |
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| T |
5214114 |
aaactgttgattgatatatccaaatatttca---tagaagaatgtatgaaccatcttgggaataaaccaaccaatttgttgctggataggtccatcaata |
5214018 |
T |
|
| Q |
201 |
tcaaattgtattgataagaaagaaaagtaggaatgacactt |
241 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||||||| |
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|
| T |
5214017 |
tcaaactatattgatatgaaagaaaagtaggaatgacactt |
5213977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7142594 - 7142354
Alignment:
| Q |
1 |
aattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccactt |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| |||||||||||| | | |||| |||||||||| | ||| ||||| || ||||| |||||| |
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| T |
7142594 |
aattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctggaagcaaaccactt |
7142495 |
T |
|
| Q |
101 |
aaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaa---cttggggatgagccaactattttgtttccggaaaggtccacca |
197 |
Q |
| |
|
|||||||||||||||||||||| || | || || |||||||||||||||| |||||| |||||||||||| ||||||| ||| ||||||| | |
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| T |
7142494 |
aaattgttgtttgatatatccaaatgttgtatcccatcattatgtatcaaccaatttcttgggagtgagccaactatattgtttctggagaggtccaaga |
7142395 |
T |
|
| Q |
198 |
acatcaaattgtattgataagaaagaaaagtaggaatgaca |
238 |
Q |
| |
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| |||||| | |||||| |||| |||| ||||||||||| |
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|
| T |
7142394 |
atgccaaattatgttgatatgaaaaaaaactaggaatgaca |
7142354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 5203324 - 5203271
Alignment:
| Q |
139 |
attatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtc |
192 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
5203324 |
attatgtatcaaccaacttgggaatgagccaactattttgtttctggtaaggtc |
5203271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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