View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_154 (Length: 240)
Name: NF8889_low_154
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_154 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5585288 - 5585182
Alignment:
| Q |
1 |
gaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctggtaacaatattgctgatattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5585288 |
gaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctggtaacaatattgctgatattga |
5585189 |
T |
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| Q |
101 |
taatatt |
107 |
Q |
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||||||| |
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| T |
5585188 |
taatatt |
5585182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5590249 - 5590143
Alignment:
| Q |
1 |
gaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctggtaacaatattgctgatattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5590249 |
gaatgccaagggtaacacgaaacaaacatgttcacagcaatgctgcagaggaggtgcttcactgtctcttcaaagctggtaacaatattgctgatattga |
5590150 |
T |
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| Q |
101 |
taatatt |
107 |
Q |
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||||||| |
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| T |
5590149 |
taatatt |
5590143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 5595633 - 5595506
Alignment:
| Q |
69 |
ttcaaagctggtaacaatattgctgatattgataatattttaattgcatatgaacataagctaagggtggttgaagattatatttatatgcttaaagagt |
168 |
Q |
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||||| ||||||||||||||||| | |||||||||| |||| |||||||||||| | || || ||| |||||||||||||||||||||||||||||||| |
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| T |
5595633 |
ttcaatgctggtaacaatattgcggctattgataatgttttgattgcatatgaatctgagttatgggaggttgaagattatatttatatgcttaaagagt |
5595534 |
T |
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| Q |
169 |
ttggtaatactggtcaccttttgttggc |
196 |
Q |
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| T |
5595533 |
ttggtaatactggtcattttttgttggc |
5595506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 5605272 - 5605389
Alignment:
| Q |
62 |
ctgtctcttcaaagctggtaacaatattgctgatattgataatattttaattgcatatgaacataagctaagggtggttgaagattatatttatatgctt |
161 |
Q |
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|||||| |||||||||||||||||||| |||| |||||||||| |||| ||| |||||||||||||| || ||| |||||||||||||||||| ||||| |
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| T |
5605272 |
ctgtctattcaaagctggtaacaatatcgctgctattgataatgtttttatttcatatgaacataagttatgggaggttgaagattatatttacatgcta |
5605371 |
T |
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| Q |
162 |
aaagagtttggtaatact |
179 |
Q |
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|||||||||||||||||| |
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| T |
5605372 |
aaagagtttggtaatact |
5605389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 5585184 - 5585128
Alignment:
| Q |
145 |
attatatttatatgcttaaagagtttggtaatactggtcaccttttgttggccctta |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5585184 |
attatatttatatgcttaaagagtttggtaatactggtcactttttgttggccctta |
5585128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 5590145 - 5590089
Alignment:
| Q |
145 |
attatatttatatgcttaaagagtttggtaatactggtcaccttttgttggccctta |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5590145 |
attatatttatatgcttaaagagtttggtaatactggtcactttttgttggccctta |
5590089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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