View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_158 (Length: 239)
Name: NF8889_low_158
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_158 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38881837 - 38881601
Alignment:
| Q |
1 |
caaagtaatatataccatatgcgtgatatcatggctggtatgatagaatctgggtgactacgccgtgannnnnnncaaaaactacattttatagcttcta |
100 |
Q |
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| T |
38881837 |
caaagtaatatataccatatgcgtcatatcatggctggtatgatagaatctgggtgactacgccgtgattttttttaaaaactacattttatagcttcta |
38881738 |
T |
|
| Q |
101 |
taaaatcaaatcatcgtaatattcacataatatatcaccatgatattaaaaatacacgcaatagacactgtttccagaaa-ctctttgtcactttagtgc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38881737 |
taaaatcaaatcatcgtaatattcacataatatatcaccatgatgtcaaacatacacgcaatagacactgtttccagaaacctctttgtaactttagtgc |
38881638 |
T |
|
| Q |
200 |
tcttgcgtctatggcatgatgattgttgatgtccatc |
236 |
Q |
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|||||||||||||||||||||| |||||||| ||||| |
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| T |
38881637 |
tcttgcgtctatggcatgatgaatgttgatgaccatc |
38881601 |
T |
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