View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_16 (Length: 694)
Name: NF8889_low_16
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 138; Significance: 9e-72; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 29524807 - 29524586
Alignment:
| Q |
3 |
aagctcgtgtagatttttatatgaccatatcgtgtggatggtaagaactgctttacaaacaacatggtagtaaagataaccaaggaaagcacccaataca |
102 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
29524807 |
aagcccgtgtagggttttatatgaccatatcgtgtggatgttgagaacggctttacaaacaacatggtagtaaagataaccaaggaaaacaccccataca |
29524708 |
T |
|
| Q |
103 |
aaaagaactttagaatgttccattttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaactag |
202 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29524707 |
gaaagaacttgagagtgttccattttccaatgaaacgattgaaagaatggctctgagcattacataataggcctactacacttgacacaattccaactat |
29524608 |
T |
|
| Q |
203 |
tcttcacaatgcgttggcatta |
224 |
Q |
| |
|
||| |||| | |||||| |||| |
|
|
| T |
29524607 |
tctccacattacgttggtatta |
29524586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 29612564 - 29612371
Alignment:
| Q |
35 |
tgtggatggtaagaactgctttacaaacaacatggtagtaaagataaccaaggaaagcacccaatacaaaaagaactttagaatgttccattttccaatt |
134 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||| ||| | ||||| | ||||||| | |||||||||| |||||||| |
|
|
| T |
29612564 |
tgtggatggtgagaactgctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaatt |
29612465 |
T |
|
| Q |
135 |
aaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaactagtcttcacaatgcgttggcattagaaa |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||| || ||||||||| || |||||| |
|
|
| T |
29612464 |
aaacgattgaaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctccaaaatgcgttgccactagaaa |
29612371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 450 - 656
Target Start/End: Complemental strand, 29489009 - 29488803
Alignment:
| Q |
450 |
gagcaagcgattttttattagcatccaagatccttagctagtcttgatataaaactttcaatggaatgatttcaagaaagatcatgtatctgtgtaattc |
549 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| | | || | |||||||||||||||| |||||||| |
|
|
| T |
29489009 |
gagcaagtgattttttatatgcatccaagatccttagctagtcttgatatcaaactttcaatgaattaatctttagaaagatcatgtatcattgtaattc |
29488910 |
T |
|
| Q |
550 |
attgactgttagtatattaagtgtgatttagaaatcccacattagac-ggaaaaatggatattgagcaatatataagcgagaggattcatatactttaat |
648 |
Q |
| |
|
||||| | ||||||| ||| || || |||||| | |||||||| || |||||||||||| ||||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
29488909 |
attgattattagtattttacatgcgagttagaagt-ccacattaaacaggaaaaatggatgttgagcaatttataaattagaggactcatatactttaat |
29488811 |
T |
|
| Q |
649 |
gttttaag |
656 |
Q |
| |
|
|||||||| |
|
|
| T |
29488810 |
gttttaag |
29488803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 29528996 - 29529070
Alignment:
| Q |
127 |
ttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaacta |
201 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
29528996 |
ttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaacta |
29529070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 29475317 - 29475394
Alignment:
| Q |
124 |
attttccaattaaacgattgaaagaaaggctctgagcataacataataggcctactacacttgacacaaggccaacta |
201 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||| | || || |||| |||||||| ||||||||||| |
|
|
| T |
29475317 |
attttccaattaatcgattgaaagaagggctcagagcataacaaaccagaccgactatacttgacataaggccaacta |
29475394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 640
Target Start/End: Complemental strand, 40260871 - 40260799
Alignment:
| Q |
568 |
aagtgtgatttagaaatcccacattagacggaaaaatggatattgagcaatatataagcgagaggattcatat |
640 |
Q |
| |
|
|||||||| || ||| |||||||||||| |||||| || || |||||||| ||||||| |||| || |||||| |
|
|
| T |
40260871 |
aagtgtgagtttgaagtcccacattagatggaaaagtgaatgttgagcaacatataagtgagaagactcatat |
40260799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University