View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_164 (Length: 229)

Name: NF8889_low_164
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_164
NF8889_low_164
[»] chr8 (1 HSPs)
chr8 (16-220)||(28954989-28955193)
[»] chr4 (2 HSPs)
chr4 (16-220)||(10799937-10800141)
chr4 (16-183)||(38969648-38969814)
[»] chr5 (4 HSPs)
chr5 (16-212)||(22123668-22123864)
chr5 (16-183)||(37571116-37571282)
chr5 (141-220)||(34628589-34628669)
chr5 (16-68)||(2064196-2064248)
[»] scaffold0029 (1 HSPs)
scaffold0029 (16-215)||(57786-57985)
[»] chr7 (2 HSPs)
chr7 (16-183)||(18338234-18338400)
chr7 (16-183)||(7302351-7302517)
[»] chr3 (2 HSPs)
chr3 (16-183)||(33905290-33905456)
chr3 (16-73)||(20149134-20149191)
[»] chr2 (4 HSPs)
chr2 (16-183)||(35596712-35596878)
chr2 (16-183)||(4965447-4965613)
chr2 (16-73)||(37367773-37367830)
chr2 (83-183)||(37389225-37389325)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 28955193 - 28954989
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| ||||||||||||| |||||||||||||    
T  28955193 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatactttttttt-gtccagtggtggtcaactccgtatcctggtatt 28955095  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgtgatttt-gggggcgggccaactactactctct 214  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28955094 gggacagttgtgccaaaatcagtgactttaggataatcactaactcttgtgcacacctcttctgatgtgattttagggggcgggccaactactactctct 28954995  T
Q  215 gctcct 220  Q
    | ||||    
T  28954994 gatcct 28954989  T

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Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 10799937 - 10800141
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||| | ||||||||||||| |||||||||||||    
T  10799937 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatactctttttt-gtcaagtggtggtcaactccgtatcctggtatt 10800035  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgtgatttt-gggggcgggccaactactactctct 214  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10800036 gggacagttgtgccaaaatcagtgactttaggataatcactaactcttgtgcacacctcttctgatgtgattttagggggcgggccaactactactctct 10800135  T
Q  215 gctcct 220  Q
    | ||||    
T  10800136 gatcct 10800141  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 38969648 - 38969814
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| |||||||| |||| ||||| |||||||    
T  38969648 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtggtggtctactccgtatcttggtatt 38969746  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||    
T  38969747 gggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttctgatgt 38969814  T

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Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 22123668 - 22123864
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         ||||| ||||||||||||| |||||||||||||    
T  22123668 acatcaagattatgtctgagcaagttatctttccaataggggaggttccaaaatatactttttttt-gtccagtggtggtcaactccgtatcctggtatt 22123766  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgtg-attttgggggcgggccaactactactct 212  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  22123767 gggacagttgtgccaaaatcagtgactttaggataatcactaactcttgtgcacacctcttctgatgtgaatttagggggcgggccaactactactct 22123864  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 37571116 - 37571282
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| || ||||| |||| ||||| |||||||    
T  37571116 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtgatggtctactccgtatcttggtatt 37571214  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||    
T  37571215 gggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttctgatgt 37571282  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 34628669 - 34628589
Alignment:
Q  141 ctttaggataatcactaactcttgtgcacacctcttctgatgtgatttt-gggggcgggccaactactactctctgctcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  34628669 ctttaggataatcactaactcttgtgcacacctcttctgatgtgattttagggggcgggccaactactactctctgatcct 34628589  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2064196 - 2064248
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaa 68  Q
    ||||||||||||||||| || || || |||||||| || ||||||||||||||    
T  2064196 acatcaagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaa 2064248  T

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Target: scaffold0029 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 57786 - 57985
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| ||||||| ||||| |||||||||||||    
T  57786 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatactctttttt-gtccagtggtggttaactccgtatcctggtatt 57884  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgtgatttt-gggggcgggccaactactactctct 214  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||    
T  57885 gggacagttgtgccaaaatcagtgactttaggataatcactaactcttgtgcacacctctactgatgtaattttagggggcgggccaattactactctct 57984  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 18338234 - 18338400
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| |||||||| |||| ||||| |||||||    
T  18338234 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtggtggtctactccgtatcttggtatt 18338332  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||    
T  18338333 gggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttctgatgt 18338400  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 7302351 - 7302517
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| |||||||| |||| ||||| |||||||    
T  7302351 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtggtggtctactccgtatcttggtatt 7302449  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| |||| ||||||    
T  7302450 gggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttatgatgt 7302517  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 33905290 - 33905456
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| |||||||| |||| ||||| |||||||    
T  33905290 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtggtggtctactccgtatcttggtatt 33905388  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||    
T  33905389 gggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttctgatgt 33905456  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 20149191 - 20149134
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatac 73  Q
    ||||||||||||||||| || || || ||||||||||| || ||||||||||| ||||    
T  20149191 acatcaagattatgtctcagtaaattgtctttccaataaggaaggtcccaaaaaatac 20149134  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 35596878 - 35596712
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| |||||||| |||| ||||| |||||||    
T  35596878 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtggtggtctactccgtatcttggtatt 35596780  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||    
T  35596779 gggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttctgatgt 35596712  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 4965447 - 4965613
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacnnnnnnnnngtccaatggtggtcaactctgtatcctggtatt 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         ||||| |||||||| |||| ||||| |||||||    
T  4965447 acatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatac-tccttttagtccagtggtggtctactccgtatcttggtatt 4965545  T
Q  116 gggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatgt 183  Q
    ||||||| |   ||| ||| ||| ||||| |||||||||| ||||||||| ||||| |||||||||||    
T  4965546 gggacagctcgaccataatcagtaacttttggataatcacaaactcttgtccacacttcttctgatgt 4965613  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 37367773 - 37367830
Alignment:
Q  16 acatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatac 73  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  37367773 acatcaagattatgtctgagcaagttatctttccaatatgagaggtcccaaaatatac 37367830  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 37389225 - 37389325
Alignment:
Q  83 gtccaatggtggtcaactctgtatcctggtattgggacagttatgccaaaataagtgactttaggataatcactaactcttgtgcacacctcttctgatg 182  Q
    ||||| || |||||||||| ||||| |||||||||||||| |   ||| ||| ||||||||| |||||||||| ||||||||| ||||| ||||||||||    
T  37389225 gtccagtgctggtcaactccgtatcttggtattgggacagctcgaccataatcagtgacttttggataatcacaaactcttgtccacacttcttctgatg 37389324  T
Q  183 t 183  Q
    |    
T  37389325 t 37389325  T

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