View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_166 (Length: 226)
Name: NF8889_low_166
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_166 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 1855412 - 1855550
Alignment:
| Q |
72 |
agcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagat |
171 |
Q |
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| T |
1855412 |
agcacagacaacaaattcataacagttggttgtgacagtttcggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagat |
1855511 |
T |
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| Q |
172 |
gttatgattttgatactaaaatggtaattggaaataaca |
210 |
Q |
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| T |
1855512 |
gttatgattttgatactaaaatggtaattggaaataaca |
1855550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 1817770 - 1817641
Alignment:
| Q |
81 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagatgttatgatt |
180 |
Q |
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| T |
1817770 |
aacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcacaggtggcacttattcaacagggtgcttaacaagatgttatgatt |
1817671 |
T |
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| Q |
181 |
ttgatactaaaatggtaattggaaataaca |
210 |
Q |
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| T |
1817670 |
ttaaacctaaaatagtaattgggaataaca |
1817641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 9220616 - 9220511
Alignment:
| Q |
72 |
agcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacaagat |
171 |
Q |
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| T |
9220616 |
agcactgaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaagat |
9220517 |
T |
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| Q |
172 |
gttatg |
177 |
Q |
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|||||| |
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| T |
9220516 |
gttatg |
9220511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 9158157 - 9158110
Alignment:
| Q |
81 |
aacaaattcataacagttggttgtgacagttacggatatctcaacagt |
128 |
Q |
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| T |
9158157 |
aacaagttcgtaacggttggttgtgacagttacggttatctcaacagt |
9158110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 37566880 - 37567025
Alignment:
| Q |
72 |
agcacagacaacaaattcataacagttggttgtgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgc-------tta |
164 |
Q |
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| T |
37566880 |
agcacggaaaacaaattcataaccgttggttgcgacagttacggatatctcaacagtaatttcaagggtgccacttattctacaggatgcttaacagtta |
37566979 |
T |
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| Q |
165 |
acaagatgttatgattttgatactaaaatggtaattggaaataaca |
210 |
Q |
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| T |
37566980 |
acaagatgttatgattttgatcctaaaatggtaactgggaataaca |
37567025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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