View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_171 (Length: 220)
Name: NF8889_low_171
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_171 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 24653654 - 24653455
Alignment:
| Q |
11 |
tggacatcatacattgtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaaga----gtttattcctatg |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
24653654 |
tggacatcatacattgtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattacaaaaaaaaaaggttattcctata |
24653555 |
T |
|
| Q |
107 |
agtttcctagacacaaattcattttaattttttat---aagttt-catttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatc |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24653554 |
agttacctagacacaaattcattttaatttttttttttaagttttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatc |
24653455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 24651626 - 24651455
Alignment:
| Q |
27 |
tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctatgagtttcctagacacaaattc |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| |||| ||||||||| |
|
|
| T |
24651626 |
tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctataagttacctacacacaaatta |
24651528 |
T |
|
| Q |
127 |
attttaa-ttttttataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatc |
202 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24651527 |
attttaatttttttataagttgcatttagtgatagctaattatttcaa----aaataaatattagtgagagctaatc |
24651455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 29418556 - 29418624
Alignment:
| Q |
133 |
attttttataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29418556 |
attttttataagtttcatttagtgatagatgatttttt-aaaaataaataaatattagtgagagctaatc |
29418624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University