View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_18 (Length: 684)
Name: NF8889_low_18
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 630; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Original strand, 32547764 - 32548441
Alignment:
| Q |
1 |
attaacccaaaagtgaacagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32547764 |
attaacccaaaagtgaacagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctg |
32547863 |
T |
|
| Q |
101 |
aagctgtaatcttgtcttcactagccaaacaggatttgtgaacaaggaaacctgacaataggtgaaggaaattaaaatgattgcaggttcatatcttgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32547864 |
aagctgtaatcttgtcttcactagccaaacaggatttgtgaacaaggaaacctgacaataggtgaaggaaattaaaatgattgcaggttcatatcttgac |
32547963 |
T |
|
| Q |
201 |
accattcaggaatgtaccacagtatgttcggttggttttgcattcctacacgtccaactattaaagctaagcaatatcttaaatagatgtgcatagataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32547964 |
accattcaggaatgtaccacagtatgttcggttggttttgcattcctacacatccaactattaaagctaagcaatatcttaaatagatgtgcatagataa |
32548063 |
T |
|
| Q |
301 |
gaaagtagtacagttaagcatgttagttccgtccacgcatactatttaagcaagaacattcattgggagatacatctaatacagttttgtgaaaaccact |
400 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32548064 |
gaaagtagtacagttaagcatgttagttccatccacgcatactatttaagcaagaacattcattgggaaatacatctaatacagttttgtgaaaaccact |
32548163 |
T |
|
| Q |
401 |
tcattgtatcatttcttgtcactcttgagcccaacagatatnnnnnnnnnnnntgcaaaacataaggagatgctgagactttactcaaagcttcaacaac |
500 |
Q |
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| T |
32548164 |
tcattgtatcatttcttgtcactcttgagcccaacagatataaaaaaaaaaaatgcaaaacataaggagatgctgagactttactcaaagcttcaacaac |
32548263 |
T |
|
| Q |
501 |
aaataacaacaaaatgctagcatgattgaacaacatattatctatccaaatatcttattatgaattataagtgtggatgcccattcataatattatattt |
600 |
Q |
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| T |
32548264 |
aaataacaacaaaatgctagcatgattgaacaacatattatctatccaaatatcttattatgaattataagtgtggatgcccattcataatattatattt |
32548363 |
T |
|
| Q |
601 |
ttgaacactcaccaaagctcctgcttccgcagctgaggcaagatgaagacctgggctcaacttctcctctctgctcct |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32548364 |
ttgaacactcaccaaagctcctgcttccgcagctgaggcaagatgaagacctgggctcaacttctcctctctgctcct |
32548441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 32520631 - 32520752
Alignment:
| Q |
2 |
ttaacccaaaagtgaacagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctga |
101 |
Q |
| |
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||||||||||||||||||||||| |||||| || || | |||||||||||||| |||||||| ||||||||||||||||| |||||||| || |||||| |
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| T |
32520631 |
ttaacccaaaagtgaacagttcagaatatatagttaatttaagatggagagcagaccatatatcccagagtatggccgtgcctgatgaagcggtgtctga |
32520730 |
T |
|
| Q |
102 |
agctgtaatcttgtcttcacta |
123 |
Q |
| |
|
||||| |||||||||||||||| |
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| T |
32520731 |
agctgcaatcttgtcttcacta |
32520752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 32532325 - 32532544
Alignment:
| Q |
19 |
agttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctgaagctgtaatcttgtctt |
118 |
Q |
| |
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|||||| |||||| || || |||||||||||| || ||||||||||||||| |||||||||| ||||||| ||| ||||||||||| || |||||||| |
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| T |
32532325 |
agttcaaaatatatagctaatgtaagatggagttcagaccatatagcccagaatatggccgtgcatgatgaagaggcgtctgaagctgcaaccttgtctt |
32532424 |
T |
|
| Q |
119 |
cactagccaaacaggatttgtgaacaaggaaacctgacaataggtgaaggaaattaaaatgattgcaggttcatatcttgacaccattcaggaatgtacc |
218 |
Q |
| |
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||||| || ||||||||| | ||||| ||||||||||| |||||||||||| |||||||||| | |||| || || || |||||| |||||| || |
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| T |
32532425 |
cactacaaaagcaggatttgcgcacaagcaaacctgacaacaggtgaaggaaaccaaaatgattgtaaattcagttc-tgcca-cattcatgaatgtgcc |
32532522 |
T |
|
| Q |
219 |
acagtatgttcggttggttttg |
240 |
Q |
| |
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|||||||| | ||||||||||| |
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| T |
32532523 |
acagtatgattggttggttttg |
32532544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 519 - 619
Target Start/End: Original strand, 32521346 - 32521447
Alignment:
| Q |
519 |
agcatgattgaacaacatattatctatcc-aaatatcttattatgaattataagtgtggatgcccattcataatattatatttttgaacactcaccaaag |
617 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||||||||| |||||||||||| ||| ||| || ||| ||||||| |||||| ||||||||||||||| |
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| T |
32521346 |
agcaggattgaacaacatataatctatcccaaatatcttactatgaattataaatgttgatatcctttcgtaatattgtattttagaacactcaccaaag |
32521445 |
T |
|
| Q |
618 |
ct |
619 |
Q |
| |
|
|| |
|
|
| T |
32521446 |
ct |
32521447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 613
Target Start/End: Original strand, 32532740 - 32532844
Alignment:
| Q |
509 |
acaaaatgctagcatgattgaacaacatattatctatccaaatatcttattatgaattataagtgtggatgcccattcataatattatatttttgaacac |
608 |
Q |
| |
|
|||||| ||||| | || |||| ||||| | || ||| |||| |||||| |||||||||||| ||| ||| |||||||||| ||| ||||||||||||| |
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| T |
32532740 |
acaaaacgctagaaagactgaaaaacatgtaatttattcaaacatcttactatgaattataaatgttgatatccattcataaaattgtatttttgaacac |
32532839 |
T |
|
| Q |
609 |
tcacc |
613 |
Q |
| |
|
||||| |
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|
| T |
32532840 |
tcacc |
32532844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 23482548 - 23482709
Alignment:
| Q |
18 |
cagttcataatataaagatagtgtaagatggagagcacaccatatagcccagagtatggccgtgtctgatgaataggagtctgaagctgtaatcttgtct |
117 |
Q |
| |
|
||||||| |||||| || | ||||||||||||| || ||||||||||| ||||||||| |||| ||||||| ||| || | |||||| || ||||||| |
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|
| T |
23482548 |
cagttcaaaatatatagccaatgtaagatggagatcagaccatatagcctagagtatggtcgtgcatgatgaagagg-gtttcaagctgcaaccttgtct |
23482646 |
T |
|
| Q |
118 |
tcactagccaaacaggatttgtgaacaaggaaacctgacaataggtgaaggaaattaaaatga |
180 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||| |||| || ||||||||| ||||||| |
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|
| T |
23482647 |
tcactacaaaaaaaggatttgtgcacaagcaaacctaacaacagctgaaggaaaccaaaatga |
23482709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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