View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_21 (Length: 679)

Name: NF8889_low_21
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_21
NF8889_low_21
[»] chr8 (14 HSPs)
chr8 (280-661)||(7858890-7859275)
chr8 (16-165)||(7859390-7859539)
chr8 (285-400)||(42964747-42964861)
chr8 (286-384)||(32615798-32615896)
chr8 (295-395)||(10409679-10409779)
chr8 (285-405)||(15808698-15808818)
chr8 (316-394)||(12506409-12506487)
chr8 (318-405)||(3036504-3036591)
chr8 (285-384)||(13521757-13521856)
chr8 (286-384)||(13611292-13611390)
chr8 (295-392)||(29912112-29912207)
chr8 (315-394)||(26738514-26738593)
chr8 (286-344)||(41235913-41235971)
chr8 (354-403)||(38813752-38813801)
[»] chr1 (12 HSPs)
chr1 (285-412)||(44697992-44698119)
chr1 (287-412)||(44529221-44529345)
chr1 (287-405)||(49483604-49483721)
chr1 (316-412)||(42592705-42592801)
chr1 (318-404)||(27262774-27262860)
chr1 (315-401)||(11451854-11451940)
chr1 (299-404)||(49805999-49806104)
chr1 (288-395)||(26761207-26761315)
chr1 (315-387)||(31963039-31963111)
chr1 (345-412)||(52328016-52328082)
chr1 (360-404)||(5173074-5173118)
chr1 (364-412)||(46028375-46028423)
[»] chr5 (7 HSPs)
chr5 (304-405)||(844777-844878)
chr5 (285-405)||(38328593-38328712)
chr5 (285-405)||(41174333-41174453)
chr5 (354-405)||(33338894-33338945)
chr5 (295-394)||(40323829-40323928)
chr5 (341-404)||(19608793-19608856)
chr5 (338-405)||(41807257-41807323)
[»] chr4 (11 HSPs)
chr4 (295-412)||(27915190-27915307)
chr4 (295-404)||(26009710-26009819)
chr4 (354-404)||(37626971-37627021)
chr4 (359-412)||(6317014-6317067)
chr4 (315-384)||(11123454-11123523)
chr4 (325-412)||(38547487-38547574)
chr4 (285-400)||(54639717-54639832)
chr4 (315-392)||(24157806-24157886)
chr4 (294-404)||(3775310-3775420)
chr4 (324-405)||(43921122-43921203)
chr4 (316-404)||(5497738-5497826)
[»] chr7 (7 HSPs)
chr7 (315-403)||(7399824-7399912)
chr7 (319-394)||(6707633-6707708)
chr7 (309-412)||(41072401-41072504)
chr7 (316-378)||(7715431-7715493)
chr7 (327-404)||(47188422-47188499)
chr7 (285-365)||(36586892-36586972)
chr7 (323-395)||(39258862-39258933)
[»] chr3 (16 HSPs)
chr3 (285-412)||(43767251-43767378)
chr3 (285-400)||(31732109-31732224)
chr3 (351-412)||(31752711-31752772)
chr3 (351-412)||(44344744-44344805)
chr3 (328-411)||(27230042-27230125)
chr3 (315-412)||(30070373-30070470)
chr3 (341-412)||(50037219-50037291)
chr3 (295-393)||(15496178-15496276)
chr3 (315-412)||(31596231-31596335)
chr3 (297-393)||(34265733-34265829)
chr3 (362-404)||(24487773-24487815)
chr3 (351-412)||(15985270-15985331)
chr3 (319-384)||(47077654-47077719)
chr3 (285-405)||(12402293-12402413)
chr3 (364-412)||(40424967-40425015)
chr3 (315-387)||(50531513-50531585)
[»] chr6 (10 HSPs)
chr6 (306-412)||(9049969-9050075)
chr6 (324-405)||(24824932-24825013)
chr6 (327-404)||(31597553-31597630)
chr6 (302-400)||(2248689-2248788)
chr6 (295-384)||(24396823-24396912)
chr6 (286-400)||(30326636-30326750)
chr6 (357-394)||(2801308-2801345)
chr6 (289-405)||(6067540-6067656)
chr6 (315-394)||(342939-343018)
chr6 (327-412)||(7703003-7703088)
[»] chr2 (11 HSPs)
chr2 (289-403)||(30977764-30977882)
chr2 (294-395)||(11074542-11074643)
chr2 (327-383)||(2630926-2630982)
chr2 (320-395)||(17897848-17897923)
chr2 (295-348)||(1900611-1900664)
chr2 (319-412)||(20150389-20150482)
chr2 (357-404)||(19204411-19204458)
chr2 (338-395)||(8701059-8701116)
chr2 (341-390)||(39955479-39955528)
chr2 (315-375)||(2166797-2166857)
chr2 (327-412)||(35504050-35504136)
[»] scaffold0074 (1 HSPs)
scaffold0074 (299-392)||(29735-29828)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 280 - 661
Target Start/End: Complemental strand, 7859275 - 7858890
Alignment:
Q  280 gtaagagggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacatt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7859275 gtaagagggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacatt 7859176  T
Q  380 aaaaagtaactttttcaacataaaatatatcaannnnnnnnnn----aaatctttaacaaatatcttaaggacacttgttaacaagaccaacctaaaaac 475  Q
    |||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7859175 aaaaagtaactttttcaacataaaatatatcaattgttttcttttttaaatctttaacaaatatcttaaggacacttgttaacaagaccaaccttaaaac 7859076  T
Q  476 ctctnnnnnnnnntattacagcaaaattagaaacacaatgaagcacctagttagcttcccaatgcacattgaccatagagtaggaatcaaaatgaccaag 575  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859075 ctctaaaaaaaaatattacagcaaaattagaaacacaatgaagcacctagttagcttcccaatgcacattgaccatagagtaggaatcaaaatgaccaag 7858976  T
Q  576 attatctttgataaacgttgcaaatggatatatgactgcacccattcaagatgaaagatattgtagtcaaaatatcatattcaatt 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7858975 attatctttgataaacgttgcaaatggatatatgactgcacccattcaagatgaaagatattgtagtcaaaatatcatattcaatt 7858890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 7859539 - 7859390
Alignment:
Q  16 gagatgaaactgatttgtccaatctcaaatcaacgacatannnnnnnattacagtgtgaaactgtgttgatgctttccagcagggaaacttgatccaata 115  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859539 gagatgaaactgatttgtccaatctcaaatcaacgacatatttttttattacagtgtgaaactgtgttgatgctttccagcagggaaacttgatccaata 7859440  T
Q  116 aaaagatcgaacctacaaggattaggcactatagcttcctataaatttcc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859439 aaaagatcgaacctacaaggattaggcactatagcttcctataaatttcc 7859390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 285 - 400
Target Start/End: Original strand, 42964747 - 42964861
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||| ||||||||| ||| |||| | |||||||| ||||||||||||| |||||||||||   | |||||||||||||| ||| |||||| |||||    
T  42964747 agggaaatgctaacaagttcccctagggcacttgataagaagtttaaagtggaaattttatcttggga-ttgtgtattcaacacattgaaacatcaaaaa 42964845  T
Q  385 gtaactttttcaacat 400  Q
     |||||||||| ||||    
T  42964846 ataactttttctacat 42964861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 384
Target Start/End: Original strand, 32615798 - 32615896
Alignment:
Q  286 gggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||  ||||||||||||||||| | |||||||| ||||||||||| | |||||||||||  || | |||||||||||| ||| ||||||||||||    
T  32615798 gggaaatgttaacaagtgcccttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaa 32615896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 10409779 - 10409679
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    ||||||||||||||| ||| |||||||| | ||||||| | | || ||||||||  || ||||||||| |||| |||||||||| |||||||||||||||    
T  10409779 taacaagtgcccttaagacacttgataagaggtttaaaatagaaactttatcttgaaacttgtgtatttaacacattaaaacatcaaaaagtaacttttt 10409680  T
Q  395 c 395  Q
    |    
T  10409679 c 10409679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 15808818 - 15808698
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||| | |||||||||| ||| || ||  ||||||||||||||||||| | |||||||||||  || ||||||||| ||| |||| ||| ||||||||    
T  15808818 agggaattgctaacaagtgtcctaagaacatttgataaaaagtttaaagtagcaattttatcttaaaaattgtgtatttaacttattgaaagattaaaaa 15808719  T
Q  385 gtaactttttcaacataaaat 405  Q
    | ||||||||  |||||||||    
T  15808718 ggaactttttatacataaaat 15808698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 12506409 - 12506487
Alignment:
Q  316 ttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    ||||||| | |||||||||| ||||||||||||  || || ||||||||||| ||| |||| |||||||||||||||||    
T  12506409 ttgataagatgtttaaagtgataattttatcttaaaaattatgtattcaacacattgaaacgttaaaaagtaacttttt 12506487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 3036591 - 3036504
Alignment:
Q  318 gataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaat 405  Q
    ||||| ||||||||||| | || ||||||||  || ||||||||||||| |||||||| ||||||||  ||||||||  |||||||||    
T  3036591 gataataagtttaaagtagcaactttatcttaaaaattgtgtattcaacttattaaaagattaaaaaacaacttttttcacataaaat 3036504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 13521856 - 13521757
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    ||||||||  |||||||||| |||||| | | |||||| ||||||||||| | |||||||| ||  || |||||||||| ||| ||| ||||||||||||    
T  13521856 agggaaatgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtattctacacattgaaacattaaaaa 13521757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 13611390 - 13611292
Alignment:
Q  286 gggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||  |||||||||| |||||| | | |||||| ||||||||||| | |||||||| ||  || |||||||||| ||| ||| ||||||||||||    
T  13611390 gggaaatgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtattctacacattgaaacattaaaaa 13611292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 29912112 - 29912207
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttt 392  Q
    |||||||||||||  || | |||||||| ||||||||||| | |||||||||||  || |||||||||||||  ||| |||||| |||||| ||||||    
T  29912112 taacaagtgccct--gggcacttgataagaagtttaaagtagaaattttatcttaaaatttgtgtattcaactcattgaaacatcaaaaagcaacttt 29912207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 26738593 - 26738514
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    |||| ||| ||||||||||| | ||||||||| |  ||  ||||||||||||||||| ||||||||||||  ||||||||    
T  26738593 cttgctaagaagtttaaagtagaaattttatcctgaaatatgtgtattcaacatattgaaacattaaaaatcaacttttt 26738514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 41235971 - 41235913
Alignment:
Q  286 gggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaatttta 344  Q
    ||||||| |||||||||| | ||||| | |||||||||||||||||||| | |||||||    
T  41235971 gggaaatgctaacaagtgtcattagggcacttgataaaaagtttaaagtagaaatttta 41235913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 38813752 - 38813801
Alignment:
Q  354 ttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaa 403  Q
    |||||||||||||||||| ||||||||||||| |  |||||| |||||||    
T  38813752 ttgtgtattcaacatattgaaacattaaaaagaatttttttctacataaa 38813801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 44697992 - 44698119
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||| |||||||||||||||||| | |||||||| ||||||||||||| | |||||||||  ||||||||||||||||||||| ||||||||||||    
T  44697992 agggaaatactaacaagtgcccttagggcacttgataataagtttaaagtggaagttttatcttggaagttgtgtattcaacatattgaaacattaaaaa 44698091  T
Q  385 gtaactttttcaacataaaatatatcaa 412  Q
    ||||||||||||||||||||| ||||||    
T  44698092 gtaactttttcaacataaaatttatcaa 44698119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 287 - 412
Target Start/End: Original strand, 44529221 - 44529345
Alignment:
Q  287 ggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagt 386  Q
    |||||| |||||||||| | |||||||  ||||||| ||||||||||||| | |||||||||  ||||||||||||||||||||||||||||||||||||    
T  44529221 ggaaatgctaacaagtgtc-ttaggacatttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaacattaaaaagt 44529319  T
Q  387 aactttttcaacataaaatatatcaa 412  Q
    ||||||||||||||||||| ||||||    
T  44529320 aactttttcaacataaaatttatcaa 44529345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 287 - 405
Target Start/End: Complemental strand, 49483721 - 49483604
Alignment:
Q  287 ggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagt 386  Q
    |||||| |||||||||||| ||||    ||||||||||||||||||||||||||| ||| ||  ||||||| ||||||||| ||| ||||||||||||||    
T  49483721 ggaaatgctaacaagtgcctttagagaacttgataaaaagtttaaagtggtaattctattttggaagttgt-tattcaacacattgaaacattaaaaagt 49483623  T
Q  387 aactttttcaacataaaat 405  Q
    ||| | |||| ||||||||    
T  49483622 aacatcttcatcataaaat 49483604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 42592801 - 42592705
Alignment:
Q  316 ttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    ||||||| ||||||||||||| |  ||||||||  ||||||||||||||||  ||| |||| ||||||||||| |||||||||||||||| ||||||    
T  42592801 ttgataagaagtttaaagtggaaggtttatcttggaagttgtgtattcaacccattgaaacgttaaaaagtaattttttcaacataaaatttatcaa 42592705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 27262860 - 27262774
Alignment:
Q  318 gataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    ||||| ||||||||| ||| |||||| ||||  || |||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  27262860 gataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaa 27262774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 11451854 - 11451940
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacata 401  Q
    |||||||||||||||||||| | |||||||| ||   |||| |||||||||||  || ||| |||||||||||||||||||||||||    
T  11451854 cttgataaaaagtttaaagtagaaattttatattgagagttatgtattcaacacgttgaaatattaaaaagtaactttttcaacata 11451940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 404
Target Start/End: Complemental strand, 49806104 - 49805999
Alignment:
Q  299 aagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaac 398  Q
    ||||| ||||||||| |||||||| | ||||||| |   |||||| ||||  || ||||| |||||||| ||||||| || |||||||||||||||| ||    
T  49806104 aagtgtccttaggacacttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagtaactttttctac 49806005  T
Q  399 ataaaa 404  Q
    ||||||    
T  49806004 ataaaa 49805999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 26761315 - 26761207
Alignment:
Q  288 gaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacat-taaaaagt 386  Q
    ||||| ||||||| |||| ||||| |  ||||||| | ||||||| ||  |||||||||||  || |||||||||||||| ||||||||||  |||||||    
T  26761315 gaaatgctaacaaatgcctttagggcatttgataagaggtttaaaatgaaaattttatcttaaaatttgtgtattcaacacattaaaacatcgaaaaagt 26761216  T
Q  387 aactttttc 395  Q
    || ||||||    
T  26761215 aaatttttc 26761207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 31963111 - 31963039
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagta 387  Q
    |||||||| ||||||||| ||| |||||| | ||  || |||||||||||||| ||| |||||||||||||||    
T  31963111 cttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 52328016 - 52328082
Alignment:
Q  345 tcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    ||||| || ||||||||| || ||||||||||||||||||  |||||||| |||||||||| ||||||    
T  52328016 tctttaaaattgtgtatttaaaatattaaaacattaaaaa-caactttttaaacataaaatttatcaa 52328082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 5173074 - 5173118
Alignment:
Q  360 attcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    ||||||||||||||||| | |||||||||||||||| | ||||||    
T  5173074 attcaacatattaaaacttgaaaaagtaactttttctatataaaa 5173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 46028375 - 46028423
Alignment:
Q  364 aacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    |||| |||||||||||||||||||||||| || ||| ||||| ||||||    
T  46028375 aacacattaaaacattaaaaagtaactttatctacaaaaaatttatcaa 46028423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 844878 - 844777
Alignment:
Q  304 cccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaa 403  Q
    |||||||| | |||||||| |||||||||||||||||| ||| ||  ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||    
T  844878 cccttagggcacttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaacattttcatcataaa 844779  T
Q  404 at 405  Q
    ||    
T  844778 at 844777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 38328593 - 38328712
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||| |||||||||||||| ||| |  ||||||  ||||||||||||| |  ||| |||| ||||||||||||| || | ||| ||||||||||||    
T  38328593 agggaaatgctaacaagtgccctaagg-caattgatacgaagtttaaagtggaaggtttgtcttataagttgtgtatttaatacattgaaacattaaaaa 38328691  T
Q  385 gtaactttttcaacataaaat 405  Q
    |||||||||| ||||||||||    
T  38328692 gtaacttttttaacataaaat 38328712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 41174453 - 41174333
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    ||||||||  |||||||||| || ||  | |||||||| ||| ||||||||| | |||||||||  |||||||| ||| |||| ||| ||| ||||||||    
T  41174453 agggaaatgttaacaagtgctctaagagcacttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaa 41174354  T
Q  385 gtaactttttcaacataaaat 405  Q
    |||||||| ||||||||||||    
T  41174353 gtaactttgtcaacataaaat 41174333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 33338894 - 33338945
Alignment:
Q  354 ttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaat 405  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  33338894 ttgtgtattcaacatattaaaacattaaaaaggaatttttttaacataaaat 33338945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 40323829 - 40323928
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    |||||| |||||||| | | |||||||| | ||||||| ||| || ||||||||  || ||||||||| |||| |||||||||| |||||||||||||||    
T  40323829 taacaaatgcccttatggcacttgataataggtttaaaatggaaactttatcttgaaacttgtgtattgaacacattaaaacatcaaaaagtaacttttt 40323928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 19608793 - 19608856
Alignment:
Q  341 tttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    ||||||||  || |||| ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  19608793 tttatcttggaatttgtctattcaacacattgaaacattaaaaagtaactttttctacataaaa 19608856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 41807323 - 41807257
Alignment:
Q  338 aattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaat 405  Q
    |||||||| || ||| ||||||||||||| |||| ||| ||| ||||||||||||||| |||||||||    
T  41807323 aattttattttgtaaattgtgtattcaacctattgaaatatt-aaaagtaactttttctacataaaat 41807257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 412
Target Start/End: Original strand, 27915190 - 27915307
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    ||||||||  ||||||||| |||||||| || |||||| ||| |  ||||||||  ||||||||||||||||| ||| ||| |||||||| |||||||||    
T  27915190 taacaagtatccttaggacacttgataagaaatttaaaatggaaggtttatcttaaaagttgtgtattcaacacattcaaatattaaaaactaacttttt 27915289  T
Q  395 caacataaaatatatcaa 412  Q
     |||||||||| ||||||    
T  27915290 taacataaaatttatcaa 27915307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 26009819 - 26009710
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    ||||||||||||||| ||| |||||||| || ||||||||   || ||||||||  || |||||||||||| ||||| ||| ||||||||| ||||||||    
T  26009819 taacaagtgcccttaagacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattcaaaatattgaaatattaaaaagcaacttttt 26009720  T
Q  395 caacataaaa 404  Q
      ||||||||    
T  26009719 atacataaaa 26009710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 37626971 - 37627021
Alignment:
Q  354 ttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  37626971 ttgtgtattcaacacatttaaacattaaaaagtaactttttctacataaaa 37627021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 6317014 - 6317067
Alignment:
Q  359 tattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  6317014 tattcaacatattgaaacattaaaaaataactttttcaatataaaatttatcaa 6317067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 11123454 - 11123523
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||| ||||||||||||  ||||||||| |  || ||||||||||||||||||||||||| |||||    
T  11123454 cttgataagaagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaacatcaaaaa 11123523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 38547574 - 38547487
Alignment:
Q  325 agtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    |||||||||||| |  ||||||||  ||||| ||||||||||| ||| ||| |||||||||||  ||||| |||||||||| ||||||    
T  38547574 agtttaaagtggaaggtttatcttgaaagttatgtattcaacacattgaaatattaaaaagtagtttttttaacataaaatttatcaa 38547487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 400
Target Start/End: Complemental strand, 54639832 - 54639717
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||| | |||||||| ||   | ||||||||| |||| ||| |||||| |||||    
T  54639832 agggaaatgctagcaagttccctaagggccctttataagaagtttaaagtagaaattttattttgggatttgtgtattgaacaaattgaaacatcaaaaa 54639733  T
Q  385 gtaactttttcaacat 400  Q
    | ||||||||| ||||    
T  54639732 gcaactttttctacat 54639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 24157886 - 24157806
Alignment:
Q  315 cttgataaaaagtttaaagtggta---attttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttt 392  Q
    |||||||| ||||||||||| |||   ||||||| ||| || |||||||||||||| |||||||||| |||||| ||||||    
T  24157886 cttgataagaagtttaaagtagtagaaattttatttttgaacttgtgtattcaacacattaaaacatcaaaaagcaacttt 24157806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 3775310 - 3775420
Alignment:
Q  294 ctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttt 393  Q
    |||||||||| ||| | ||| ||||||||||| ||||| ||   ||||||||||| ||| |||| |||| |||| ||| |||||| |||||  ||| |||    
T  3775310 ctaacaagtgacctcaagacacttgataaaaaatttaatgtaaaaattttatcttgtaatttgtatattaaacacattgaaacatcaaaaaacaacattt 3775409  T
Q  394 tcaacataaaa 404  Q
    || ||||||||    
T  3775410 tctacataaaa 3775420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 405
Target Start/End: Complemental strand, 43921203 - 43921122
Alignment:
Q  324 aagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaat 405  Q
    ||||||||| ||| || |||| |||  || ||||| |||||||| ||| ||| |  ||||||||||||||||||||||||||    
T  43921203 aagtttaaaatgggaactttaccttggaaattgtgcattcaacacattgaaagaacaaaaagtaactttttcaacataaaat 43921122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 404
Target Start/End: Original strand, 5497738 - 5497826
Alignment:
Q  316 ttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    ||||||| || |||||| ||| |||||||||||  || || |||||| || | | | |||||| |||||||||||||||| ||||||||    
T  5497738 ttgataacaaatttaaaatggaaattttatcttaaaatttatgtatttaatacaatgaaacatcaaaaagtaactttttctacataaaa 5497826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 7399824 - 7399912
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaa 403  Q
    |||||||| ||||||||||||| |  ||||||||  ||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||    
T  7399824 cttgataagaagtttaaagtggaaggtttatcttggaagttgtttattcaacacattgaaacattaaaaagtaacttttttaacataaa 7399912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 394
Target Start/End: Complemental strand, 6707708 - 6707633
Alignment:
Q  319 ataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    |||| ||||||||||| | ||||||| |||   | || ||||||||||| |||||||||||||||| |||||||||    
T  6707708 ataagaagtttaaagtagaaattttaccttaatatttatgtattcaacacattaaaacattaaaaaataacttttt 6707633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 41072504 - 41072401
Alignment:
Q  309 aggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatata 408  Q
    ||||| ||||||||||| |||||| ||  || ||||  ||  || ||||| |||||||| ||| |||||  ||||||||| |||||||||||||||| ||    
T  41072504 aggacacttgataaaaaatttaaaatgaaaactttactttagaaattgtgcattcaacacattgaaacaacaaaaagtaattttttcaacataaaattta 41072405  T
Q  409 tcaa 412  Q
    ||||    
T  41072404 tcaa 41072401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 7715431 - 7715493
Alignment:
Q  316 ttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacat 378  Q
    ||||||||||||||||| | | ||| |||||||| || || ||||||||||||||| ||||||    
T  7715431 ttgataaaaagtttaaaatagaaatcttatctttaaatttatgtattcaacatatttaaacat 7715493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 47188422 - 47188499
Alignment:
Q  327 tttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    |||||| ||| |||||| ||||  || ||||| | |||||| ||||||| || |||||||||||||||| ||||||||    
T  47188422 tttaaaatggaaattttgtcttaaaatttgtgaactcaacacattaaaatatcaaaaagtaactttttctacataaaa 47188499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 36586972 - 36586892
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaa 365  Q
    ||||||||  ||||| ||| |||||||||  ||||||||||  ||||||| | |||||||||||  || ||||||||||||    
T  36586972 agggaaatgataacatgtgtccttaggacatttgataaaaaaattaaagtagaaattttatcttgaaatttgtgtattcaa 36586892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 39258862 - 39258933
Alignment:
Q  323 aaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttc 395  Q
    |||||||||| ||| |||||||| ||  || |||||||||| ||||||| |||||| ||||| ||||||||||    
T  39258862 aaagtttaaaatggaaattttattttgaaatttgtgtattc-acatattcaaacatcaaaaaataactttttc 39258933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 43767251 - 43767378
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    ||||||||  ||||||||||||||||| |  ||||||| | ||||||| ||  |||||| ||||  || ||||| |||||||| |||||||||| |||||    
T  43767251 agggaaatgttaacaagtgcccttagggcaattgataagaggtttaaaatgaaaattttgtcttgaaatttgtgcattcaacacattaaaacatcaaaaa 43767350  T
Q  385 gtaactttttcaacataaaatatatcaa 412  Q
    |||| |||||| ||||||||| ||||||    
T  43767351 gtaattttttctacataaaatttatcaa 43767378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 400
Target Start/End: Complemental strand, 31732224 - 31732109
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    |||||||| ||||||||||||||| || | || ||||| |||  |||| ||| | |||||||||   | |||||||||||||||||| |||||| |||||    
T  31732224 agggaaatgctaacaagtgcccttggggcactagataagaagcctaaaatggaagttttatcttgggatttgtgtattcaacatattgaaacatcaaaaa 31732125  T
Q  385 gtaactttttcaacat 400  Q
    | ||||||||||||||    
T  31732124 gcaactttttcaacat 31732109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 31752772 - 31752711
Alignment:
Q  351 aagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    ||||||||||||||||| ||||||| |||||||||||  |||||||||||||||| ||||||    
T  31752772 aagttgtgtattcaacacattaaaatattaaaaagtacatttttcaacataaaatttatcaa 31752711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 44344805 - 44344744
Alignment:
Q  351 aagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||||||||| ||| ||||||    
T  44344805 aagttgtgtattcaacatattaaaatattaaaaaataattttttcaacatataatttatcaa 44344744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 27230125 - 27230042
Alignment:
Q  328 ttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatca 411  Q
    ||||||||| ||||| || ||  || ||||||| |||| ||||||||| ||||||||||||||| || ||||||||||||||||    
T  27230125 ttaaagtggaaatttcatattgaaaattgtgtaatcaatatattaaaatattaaaaagtaacttctttaacataaaatatatca 27230042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 30070373 - 30070470
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    ||||||||||||||||||| |  |||||||| |  | |||||||||||  ||| ||| || ||||||||||||| ||||| |||||||||| ||||||    
T  30070373 cttgataaaaagtttaaagggaaaattttatttcgtgagttgtgtattttacacattgaatcattaaaaagtaatttttttaacataaaatttatcaa 30070470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 50037291 - 50037219
Alignment:
Q  341 tttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaa-ctttttcaacataaaatatatcaa 412  Q
    ||||||||  ||||||||||||||||| |||||||||||||||| |||  ||||| |||||||||| ||||||    
T  50037291 tttatcttaaaagttgtgtattcaacacattaaaacattaaaaaataattttttttaacataaaatttatcaa 50037219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 15496276 - 15496178
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttt 393  Q
    ||||||||||||||| | |||||||||| || |||||||| | || ||||||||   | |||||||||||||||||| ||  || |||||| |||||||    
T  15496276 taacaagtgcccttatggcccttgataagaaatttaaagtaggaactttatcttgggatttgtgtattcaacatattgaattatcaaaaagcaactttt 15496178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 31596231 - 31596335
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaa-------acattaaaaagtaactttttcaacataaaatat 407  Q
    |||||||| ||||||||||||| ||||||| |||   | |||||||||||||| ||| ||       |||||||||||||| |||||||||||||||| |    
T  31596231 cttgataagaagtttaaagtggcaattttaccttgggaattgtgtattcaacacattgaattttgaaacattaaaaagtaattttttcaacataaaattt 31596330  T
Q  408 atcaa 412  Q
    |||||    
T  31596331 atcaa 31596335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 34265829 - 34265733
Alignment:
Q  297 acaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttt 393  Q
    ||||||| ||||||| | | |||||| ||||| ||||||  | |||||||||  ||||||||||||| || |||| ||| |||||||||||| ||||    
T  34265829 acaagtgtccttagggcacgtgataagaagttaaaagtgaaagttttatcttaaaagttgtgtattccacgtattgaaatattaaaaagtaaatttt 34265733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 24487773 - 24487815
Alignment:
Q  362 tcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||    
T  24487773 tcaacatattaaaacatcaaaaattaactttttctacataaaa 24487815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 15985270 - 15985331
Alignment:
Q  351 aagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    |||||| | |||||||| ||| ||| |||||||||||| ||||| |||||||||| ||||||    
T  15985270 aagttgagcattcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaa 15985331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 47077654 - 47077719
Alignment:
Q  319 ataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    ||||||||||||||||   |||||||| ||| || ||||||||| |||||||||||| || |||||    
T  47077654 ataaaaagtttaaagtaaaaattttatttttgaatttgtgtatttaacatattaaaatataaaaaa 47077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 12402293 - 12402413
Alignment:
Q  285 agggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    ||||||||  |||||||||| | |||||| |||||||| |||||| || | | |||||| ||||  |  ||||||||| |||||||||||| || |||||    
T  12402293 agggaaatgttaacaagtgctcataggacacttgataataagttttaaatagaaattttttcttgaaccttgtgtatttaacatattaaaatatcaaaaa 12402392  T
Q  385 gtaactttttcaacataaaat 405  Q
      || |||||| |||| ||||    
T  12402393 tcaagtttttcgacatgaaat 12402413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 40424967 - 40425015
Alignment:
Q  364 aacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    |||||||||||| |||||||| |||| |||||||||| |||| ||||||    
T  40424967 aacatattaaaatattaaaaaataacattttcaacatgaaatttatcaa 40425015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 50531585 - 50531513
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagta 387  Q
    ||||||||||| |||||| ||  |||||| | ||  || |||||||||||||| ||| |||||||||||||||    
T  50531585 cttgataaaaaatttaaaatgaaaattttgtgttaaaatttgtgtattcaacaaattgaaacattaaaaagta 50531513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 9049969 - 9050075
Alignment:
Q  306 cttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaat 405  Q
    |||||| | |||||||||||||||||| | | || ||||| ||  ||||||||||||||||| ||| ||| |||||||||||| ||||| ||||||||||    
T  9049969 cttagggcacttgataaaaagtttaaaatagaaagtttattttgaaagttgtgtattcaacacattgaaatattaaaaagtaattttttaaacataaaat 9050068  T
Q  406 atatcaa 412  Q
     ||||||    
T  9050069 ttatcaa 9050075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 324 - 405
Target Start/End: Complemental strand, 24825013 - 24824932
Alignment:
Q  324 aagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaat 405  Q
    ||||||||||| | |||||| ||||  || ||||||||||| |||||| ||| |||||||||||||||||| ||||||||||    
T  24825013 aagtttaaagtagaaattttgtcttagaaattgtgtattcagcatattgaaatattaaaaagtaactttttaaacataaaat 24824932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 31597630 - 31597553
Alignment:
Q  327 tttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    |||||| ||| |||||| ||||  || ||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  31597630 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaacattaaaaagtaactttttctacataaaa 31597553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 2248689 - 2248788
Alignment:
Q  302 tgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagtt-gtgtattcaacatattaaaacattaaaaagtaactttttcaacat 400  Q
    |||||| ||| | |||| ||| ||||| ||||||| |||||||||||    ||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  2248689 tgccctaagggcacttgctaagaagttcaaagtggaaattttatcttcggtgtttgtgtattcaacacattgaaacattaaaaagtaactttttcaacat 2248788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 24396912 - 24396823
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaa 384  Q
    ||||||||||||||||| | |||||||||||||| ||| | | |||||||||||  || | |||||||||| | ||| ||||||||||||    
T  24396912 taacaagtgcccttagggcacttgataaaaagttgaaaatagaaattttatcttagaattcgtgtattcaaaacattgaaacattaaaaa 24396823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 400
Target Start/End: Original strand, 30326636 - 30326750
Alignment:
Q  286 gggaaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaag 385  Q
    ||||||| || ||||||||||||| | |  ||||||| ||||||||| ||| |||||||||||   | |||||||||||||| ||| |||||| ||| |     
T  30326636 gggaaatgctgacaagtgcccttaaggcatttgataagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaacatcaaagaa 30326735  T
Q  386 taactttttcaacat 400  Q
     ||||||||| ||||    
T  30326736 caactttttctacat 30326750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 2801308 - 2801345
Alignment:
Q  357 tgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2801308 tgtattcaacacattaaaacattaaaaagtaacttttt 2801345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 6067656 - 6067540
Alignment:
Q  289 aaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaa 388  Q
    |||| |||||||||||||| | |||||||||||| ||   ||||||   || ||||||||  || ||||||||||||| |||| ||  ||||||||| ||    
T  6067656 aaatgctaacaagtgccctaacgacccttgataagaaacataaagtatcaactttatcttagaaattgtgtattcaacttattgaacgattaaaaagaaa 6067557  T
Q  389 ctttttcaacataaaat 405  Q
    ||||||| |||| ||||    
T  6067556 ctttttctacatgaaat 6067540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 394
Target Start/End: Original strand, 342939 - 343018
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttttt 394  Q
    |||||||||||||||||| ||  |||||| | ||  || || ||||||||||| ||| |||||||||||| |||||||||    
T  342939 cttgataaaaagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaataacttttt 343018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 7703003 - 7703088
Alignment:
Q  327 tttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttca-acataaaatatatcaa 412  Q
    |||||||||| |||| ||||||  || ||||| |||||| ||||| ||||| |||||||||||||||| | ||||||||| ||||||    
T  7703003 tttaaagtggaaattatatcttaaaaattgtgcattcaa-atatttaaacaataaaaagtaacttttttatacataaaatttatcaa 7703088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 289 - 403
Target Start/End: Complemental strand, 30977882 - 30977764
Alignment:
Q  289 aaatcctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgt----attcaacatattaaaacattaaaaa 384  Q
    |||| ||||||||||  |||||||| |||||||| ||| ||||||||| |  ||||| ||  |||||||||    |||||||| ||||||||||||||||    
T  30977882 aaatgctaacaagtgttcttaggacacttgataagaagcttaaagtggaaggtttattttggaagttgtgtgtgtattcaacacattaaaacattaaaaa 30977783  T
Q  385 gtaactttttcaacataaa 403  Q
     ||||||||||||||||||    
T  30977782 ctaactttttcaacataaa 30977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 395
Target Start/End: Complemental strand, 11074643 - 11074542
Alignment:
Q  294 ctaacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttt 393  Q
    |||||||||||||||||  | |||||||| ||||||||||| | |||||| ||||   | |||||||||||||| ||| |||||| |||||| |||||||    
T  11074643 ctaacaagtgcccttagagcacttgataagaagtttaaagtagaaattttttcttgggatttgtgtattcaacacattgaaacataaaaaagcaactttt 11074544  T
Q  394 tc 395  Q
    ||    
T  11074543 tc 11074542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 2630926 - 2630982
Alignment:
Q  327 tttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaa 383  Q
    |||||||||| |||||||| ||  |||||||||||||||||||||||||||| ||||    
T  2630926 tttaaagtggaaattttatattagaagttgtgtattcaacatattaaaacataaaaa 2630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 395
Target Start/End: Complemental strand, 17897923 - 17897848
Alignment:
Q  320 taaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttc 395  Q
    ||||||||||||| ||  |||||||||||  || ||||| ||||||||||||||||||  ||||||||| ||||||    
T  17897923 taaaaagtttaaaatgcaaattttatcttaaaaattgtgcattcaacatattaaaacaacaaaaagtaattttttc 17897848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 1900664 - 1900611
Alignment:
Q  295 taacaagtgcccttaggacccttgataaaaagtttaaagtggtaattttatctt 348  Q
    ||||||||||||| ||||| |||||||| ||| ||||||| |||||||||||||    
T  1900664 taacaagtgccctaaggacacttgataagaagcttaaagtagtaattttatctt 1900611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 20150389 - 20150482
Alignment:
Q  319 ataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatatatcaa 412  Q
    |||| ||||||||| ||| | |||||| ||  ||| | |||||| || | ||||||| |||||||||||||| |||||||||||||| ||||||    
T  20150389 ataagaagtttaaaatggaagttttattttgaaaggtatgtatttaatacattaaaatattaaaaagtaactatttcaacataaaatttatcaa 20150482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 19204411 - 19204458
Alignment:
Q  357 tgtattcaacatattaaaacattaaaaagtaactttttcaacataaaa 404  Q
    ||||||||||| ||| |||||| ||||| |||||||||||||||||||    
T  19204411 tgtattcaacacattgaaacataaaaaaataactttttcaacataaaa 19204458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 8701059 - 8701116
Alignment:
Q  338 aattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaactttttc 395  Q
    |||||||||||  || || ||||||||||| ||||||||| |||||||||| ||||||    
T  8701059 aattttatcttaaaaattatgtattcaacacattaaaacaataaaaagtaaatttttc 8701116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 39955528 - 39955479
Alignment:
Q  341 tttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaact 390  Q
    ||||||||| || ||||| |||||||||||||||| | ||||||||||||    
T  39955528 tttatctttaaaattgtgcattcaacatattaaaataataaaaagtaact 39955479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 2166797 - 2166857
Alignment:
Q  315 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaa 375  Q
    |||||||| ||||||||||||| | |||||||||  || |||| ||||||||| |||||||    
T  2166797 cttgataataagtttaaagtggaagttttatcttaaaaattgtatattcaacacattaaaa 2166857  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 35504050 - 35504136
Alignment:
Q  327 tttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaa--ctttttcaacataaaatatatcaa 412  Q
    |||||||||  |||||||| ||| |||||| | |||||||| ||||||| ||||||||||||   ||||| |||||||||| ||||||    
T  35504050 tttaaagtgaaaattttat-tttaaagttgcgcattcaacacattaaaatattaaaaagtaaatattttttaacataaaatttatcaa 35504136  T

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Target: scaffold0074 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 299 - 392
Target Start/End: Complemental strand, 29828 - 29735
Alignment:
Q  299 aagtgcccttaggacccttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacatattaaaacattaaaaagtaacttt 392  Q
    ||||||||||||| | |||||||||||||| ||||| | |||||||||||  || | |||||||||||| ||| ||||||| |||| |||||||    
T  29828 aagtgcccttagggcacttgataaaaagttgaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattgaaaaataacttt 29735  T

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