View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_22 (Length: 659)
Name: NF8889_low_22
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 16 - 639
Target Start/End: Complemental strand, 44566670 - 44566066
Alignment:
| Q |
16 |
acatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatctaaaccatgggggtgatgtcattgtatcagaagtatt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566670 |
acatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatctaaaccatgggggtgatgtcattgtatcagaagtatt |
44566571 |
T |
|
| Q |
116 |
aacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaaggcacctgtaaattaggtaaagaaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566570 |
aacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaaggcacctgtaaattaggtaaagaaaat |
44566471 |
T |
|
| Q |
216 |
aatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaactcagaagaataatgtggcattagacttactgcatat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566470 |
aatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaactcagaagaataatgtggcattagacttactgcatat |
44566371 |
T |
|
| Q |
316 |
atctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaatatataataaaatatatcagcacactgcaacgattaataccat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566370 |
atctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgcaaaaagcaatatataataaaatatatcagcacactgcaacgattaataccat |
44566271 |
T |
|
| Q |
416 |
agacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaactagagg |
515 |
Q |
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| T |
44566270 |
agacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaactagagg |
44566171 |
T |
|
| Q |
516 |
aaaaccatagctatagaatgaaagtccaactgcagcaatggttgaggatacaaccacgggattgataaacctgaaaattgagatgtcaaacatattactt |
615 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566170 |
a-------------------aaagtccaactgcagcaatggttgaggatacaaccacgggattgataaacctgaaaattgagatgtcaaacatattactt |
44566090 |
T |
|
| Q |
616 |
ttattacagacactaaagtgatca |
639 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
44566089 |
ttattacagacactaaagtgatca |
44566066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 143 - 642
Target Start/End: Original strand, 36032639 - 36033134
Alignment:
| Q |
143 |
ttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaaggcacctgtaaattaggtaaagaaaata----atatcacttaacaaaaatcatt |
238 |
Q |
| |
|
|||||||||||| ||||||| || |||||| | ||||||||||||||| ||||| |||||||||||| |||||| | ||||||||||| |||||||| |
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|
| T |
36032639 |
ttcagtcagcaagaaagcaactgcccatgtaattgccaaacccaaaggaacctgcaaattaggtaaaaaaaatatataacatcacttaacagaaatcatt |
36032738 |
T |
|
| Q |
239 |
ttttacaccacagaaatttattttctcttctgaagagcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaa |
338 |
Q |
| |
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| |||||| ||||||||||||||| || || |||| ||||| |||| ||| | ||||||| ||||||||||||||| |||||||| | ||||||| |
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| T |
36032739 |
tgttacacagcagaaatttattttcactgctatagagtaactcggaaggatattatggcattgcacttactgcatatattagaaatatgcggtgtccaag |
36032838 |
T |
|
| Q |
339 |
aacagatatcttacgaagatactgccaaaagcaatatataataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattc |
438 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||| | | ||||| | | | ||| ||||||||||||||||| ||| ||||||||| |
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| T |
36032839 |
aacagatatcttacgaagatactgcagaaagcaataaaaaatggatgaagtcagcgc---gtgatgatcaataccatagacaaagtgggagtctgaattc |
36032935 |
T |
|
| Q |
439 |
aacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaactagaggaaaaccatagctatagaatgaaa |
538 |
Q |
| |
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| |||||||| |||||||||||| ||||||||| |||| |||||| ||||||| ||| |||||||| |||||||||||||| | ||| ||||||| |
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|
| T |
36032936 |
a-----cttacaagggaaaaaacaataaccactaatatttgtattgcaccaatctcaatacatgtgccaacaagaggaaaaccataaccataaaatgaaa |
36033030 |
T |
|
| Q |
539 |
gtccaactgcagcaatggttgaggatacaaccacgggattgataaacctgaaaattgagatgtcaaacatattacttttattacagacactaaagtgatc |
638 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| || || | | ||||||| |
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|
| T |
36033031 |
gtccaactgcagcaatggttggggatacaaccacaggattgataaacctgaaaattgagatgcaaaacatattactttgatttcaaacccaacagtgatc |
36033130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 36032434 - 36032553
Alignment:
| Q |
16 |
acatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatctaaaccatgggggtgatgtcattgtatcagaagtatt |
115 |
Q |
| |
|
||||||||| |||||||||||| | ||| ||||||||||||||||||| ||||||||||||| |||||||||||| |||| | |||| || ||||||| |
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|
| T |
36032434 |
acatcacaagagccattttccagtggaagacaggagtaccccattgcaatggatagggaaatttaaaccatggggatgatttgattgcatgcgaagtatc |
36032533 |
T |
|
| Q |
116 |
aacttgacaatgtttcatcc |
135 |
Q |
| |
|
|||| |||||| |||||||| |
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|
| T |
36032534 |
aactcgacaatatttcatcc |
36032553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 442 - 591
Target Start/End: Complemental strand, 20122045 - 20121896
Alignment:
| Q |
442 |
aaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaactagaggaaaaccatagctatagaatgaaagtc |
541 |
Q |
| |
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|||||| ||||| | |||||||||| ||||||||||||||||||||| ||||||||||| || || |||| || || || || || | |||||||||| |
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|
| T |
20122045 |
aaacttccaagagagaaaacaataaccactaatatctgtactgcaccaatctcaagacatgtacccactaatgggaatccgtaactgaaaaatgaaagtc |
20121946 |
T |
|
| Q |
542 |
caactgcagcaatggttgaggatacaaccacgggattgataaacctgaaa |
591 |
Q |
| |
|
||||||||||||| |||| ||||||||| || |||||||| | ||||||| |
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| T |
20121945 |
caactgcagcaatagttggggatacaactacaggattgatcaccctgaaa |
20121896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 20122217 - 20122158
Alignment:
| Q |
303 |
acttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactg |
362 |
Q |
| |
|
||||||||| || || |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
20122217 |
acttactgcgtagattagaaatatgcgatgtccaagaacagatatcttacgaagatactg |
20122158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 20122569 - 20122450
Alignment:
| Q |
16 |
acatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatctaaaccatgggggtgatgtcattgtatcagaagtatt |
115 |
Q |
| |
|
|||| |||| |||||||||||| | || |||||| ||||||||| | ||||||||||||||||||||||| | ||| ||| || || |||||||| |
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| T |
20122569 |
acattacaagagccattttccagtgaaagacaggaacaccccattgtaacggatagggaaatctaaaccatggagaggatttcaatgcatgagaagtatc |
20122470 |
T |
|
| Q |
116 |
aacttgacaatgtttcatcc |
135 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
20122469 |
aacccgacaatgcttcatcc |
20122450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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