View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_23 (Length: 645)
Name: NF8889_low_23
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 235 - 638
Target Start/End: Original strand, 42972380 - 42972783
Alignment:
| Q |
235 |
ggaacaatttcaacaaccccactctcaatcgaagaaagatacagtcaatggaagtcactcgttccagtcctctacgactggctagcgaatcacaatctag |
334 |
Q |
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| T |
42972380 |
ggaacaatttcaacaaccccactctcaatcgaagaaagatacagtcaatggaagtcactcgttccagtcctctacgactggctagcgaatcacaatctag |
42972479 |
T |
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| Q |
335 |
tatggccatcacaatcatgccgttggggttcacttcttgatcatgctacttacaagaatcgtcatcgtctttatctttctgaacaaactgatggaactgc |
434 |
Q |
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| T |
42972480 |
tatggccatcacaatcatgccgttggggttcacttcttgatcatgctacttacaagaatcgtcatcgtctttatctttctgaacaaactgatggaactgc |
42972579 |
T |
|
| Q |
435 |
tcccaatacgcttgttattgctacttgtgaaattgttaaacctagggttgctgctgctgaacatattgctatgtttaatgaagaggcgcgttctccgttt |
534 |
Q |
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| T |
42972580 |
tcccaatacgcttgttattgctacttgtgaaattgttaaacctagggttgctgctgctgaacatattgctatgtttaatgaagaggcgcgttctccattt |
42972679 |
T |
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| Q |
535 |
gttaagaaggttaaaactattctccatcccggtgaggtgaggtttcaaagttttattcannnnnnnngtgtttcgttatatctattagtttgtttgattc |
634 |
Q |
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| T |
42972680 |
gttaagaaggttaaaactattcttcatcccggtgaggtgaggtttccaagttttattcatttattttctgtttcgttatatctattactttgtttgattc |
42972779 |
T |
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| Q |
635 |
tgtg |
638 |
Q |
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|||| |
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| T |
42972780 |
tgtg |
42972783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 42972267 - 42972322
Alignment:
| Q |
134 |
aagctaatcgatataaataaattaaaaaataattatatattattcatacacattct |
189 |
Q |
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| T |
42972267 |
aagctaatcgatataaataaattaaaaaataattatatattattcatacacattct |
42972322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 42972210 - 42972254
Alignment:
| Q |
69 |
aaaaatggagcgggaaatacaaacaaattactatctcccttcccg |
113 |
Q |
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| T |
42972210 |
aaaaatggagcgggaaatacaaacaaattactatctcccttcccg |
42972254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 42972179 - 42972217
Alignment:
| Q |
18 |
caaattgggctgcaaagtgcaaactaagcacaaaaatgg |
56 |
Q |
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| T |
42972179 |
caaattgggctgcaaagtgcaaactaagcacaaaaatgg |
42972217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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