View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_29 (Length: 629)
Name: NF8889_low_29
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 2793832 - 2794149
Alignment:
| Q |
19 |
ttgatgacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggtcagccgcttgg |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2793832 |
ttgataacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggtcagccgcttgg |
2793931 |
T |
|
| Q |
119 |
gattatcagaggtgctgctgatgagattctttccattctgaaaaacgactctattggtgacaagaagattaacattgagaaactgcttaaccctatcact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2793932 |
gattatcagaggtgctgctgatgagattctttccattctgaaaaacgactctgttggtgacaagaagattaacattgagaaactgcttaaccctatcact |
2794031 |
T |
|
| Q |
219 |
gatactgtgtttaatcaccttgtttcgattggaaaggttataactgattttctggagtttgaggatgttgagggtggttttgattcttttgacggtgttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2794032 |
gatactgtgtttaatcaccttgtttcgattggaaagcttataactgattttctggagtttgaggatgtggagggtggttttgattcttttgacggtgttg |
2794131 |
T |
|
| Q |
319 |
cagtggaatttgaagaga |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2794132 |
cagtggaatttgaagaga |
2794149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 404 - 612
Target Start/End: Original strand, 2794217 - 2794425
Alignment:
| Q |
404 |
ttttgaaataggtgactatgcaatgcaaataggtggtggaattgttgttgaagaaattgagaaagtagatgatgaagaattgaatgtgcatgatattgat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794217 |
ttttgaaataggtgactatgcaatgcaaataggtggtggaattgttgttgaagaaattgagaaagtagatgatgaagaattgaatgtgcatgatattgat |
2794316 |
T |
|
| Q |
504 |
gcgtattggcttcagaggaaaatctcgccggcttttggaccagagattgatccagaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtg |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794317 |
gcgtattggcttcagaggaaaatctcgccggcttttggaccagagattgatccggaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtg |
2794416 |
T |
|
| Q |
604 |
aggctgatg |
612 |
Q |
| |
|
||||||||| |
|
|
| T |
2794417 |
aggctgatg |
2794425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 29261256 - 29261349
Alignment:
| Q |
20 |
tgatgacggtgtttacgagccaaagacgaaggaaactcgtgctgcttatgaggcgatgttgagtgtaatccagcagcggtttggtggtcagccg |
113 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| || | || |||||||| || ||||||||||| || ||||| | | |||||||||||||| |
|
|
| T |
29261256 |
tgatgacggtgtttatcagccgaagacgaaggagacaagagcagcttatgaagctatgttgagtgtgattcagcaacagcttggtggtcagccg |
29261349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University