View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_30 (Length: 577)
Name: NF8889_low_30
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_30 |
 | |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 26357576 - 26358160
Alignment:
| Q |
1 |
agttatgcatagcgagtgatatagtacgattaagttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgc |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26357576 |
agttatgcatagcgagtgatatagtacaattaagttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgc |
26357675 |
T |
|
| Q |
101 |
aatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaac |
200 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357676 |
aatacctaaagattcaacaagctattactaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaac |
26357775 |
T |
|
| Q |
201 |
a----------ctgatatcaaacatgtaagctagtaatatccaaatcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactc |
290 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26357776 |
actgataaacactgatatcaaacatgtaagctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactc |
26357875 |
T |
|
| Q |
291 |
ccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttctaacataactgaaatatagtttcaattt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357876 |
ccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttctaacataactgaaatatagtttcaattt |
26357975 |
T |
|
| Q |
391 |
catgtttaatagggttcaaatataagcttaatcaccaaattcagctactctagactctggtgtcgctatcggaatttgatcagaacagaaatcaacgttg |
490 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
26357976 |
catgtttaatagggttcaaatat-agcttaatcacctaattcagctactctagactct-gtgtcgctatcggaatttgatcagaacaggaatcaacattg |
26358073 |
T |
|
| Q |
491 |
atgacaataatgatttttgacaacacataaactcgcagccaattccccttatttttgtttttcgagtgccttgtgattaaaattaac |
577 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26358074 |
atgacaataatgattttggacaacacataaactcgcagccaattccccttatttttgtttttcaagtgccttgtgattaaaattaac |
26358160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 26356821 - 26356882
Alignment:
| Q |
310 |
acaatgttatcataaagattctagagataaagatcaagcagcaaaataggttctaacataac |
371 |
Q |
| |
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||||||||||||||||| || | |||| |||||||| ||| ||||||||||||| |||||| |
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| T |
26356821 |
acaatgttatcataaagcttttccagattaagatcaaacaggaaaataggttctagcataac |
26356882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 36 - 448
Target Start/End: Original strand, 51759446 - 51759850
Alignment:
| Q |
36 |
tgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaacact |
135 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||| |
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| T |
51759446 |
tgagctgggaacataaattaagcaacaattatacataaccaagagtaagaact-------gatgcagtatctaaagattcaacaagctattactaacact |
51759538 |
T |
|
| Q |
136 |
ccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatccaaa |
235 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |
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| T |
51759539 |
ctaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatctaaa |
51759638 |
T |
|
| Q |
236 |
tcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagag |
335 |
Q |
| |
|
| || ||||| |||||||||||||||||||| ||||||| |||||||||||||| | |||||||||| ||||||||||| | || ||| || ||||| |
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|
| T |
51759639 |
taactatgttgaatggattgagaagacaattttgaatatataccagaaacaactccgaagttaatccatacttcacaatgtcacgatgaagcttttagag |
51759738 |
T |
|
| Q |
336 |
ataaagatcaagcagcaaaataggttctaacataactgaaatatagtttcaatttcatgtttaatagggttcaaatataagcttaatcaccaaa-ttcag |
434 |
Q |
| |
|
|| || ||||||||||||||||||||||| ||| || ||| |||| |||||| ||| | ||||||| | |||||| || ||||| |||||| ||||| |
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|
| T |
51759739 |
atcaaaatcaagcagcaaaataggttctagcatgac-aaaacataggttcaatctcacgagtaataggcctgaaatat-agattaattaccaaacttcag |
51759836 |
T |
|
| Q |
435 |
ctactctagactct |
448 |
Q |
| |
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|||||| ||||||| |
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| T |
51759837 |
ctactcgagactct |
51759850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 33 - 448
Target Start/End: Original strand, 6684843 - 6685250
Alignment:
| Q |
33 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
132 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||| |
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|
| T |
6684843 |
agttgagctgggaacataaattatgcaacaattatacataaccaagagtaagaact-------gatgcagtacctaaagattcaacaagctatacctaac |
6684935 |
T |
|
| Q |
133 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatcc |
232 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
6684936 |
actctaaatcaaaagggcagcatccaactgttatactaatattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatcc |
6685035 |
T |
|
| Q |
233 |
aaatcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattcta |
332 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||| | || |
|
|
| T |
6685036 |
aaataactatgttgaatggactgagaagacaattttgaatatatgccaaaaacaactcccaagttaatccatacttcacaatgtcatcatgaagctctta |
6685135 |
T |
|
| Q |
333 |
gagataaagatcaagcagcaaaataggttctaacataactgaaatatagtttcaatttcatgtttaatagggttcaaatataagcttaatcaccaaa-tt |
431 |
Q |
| |
|
||||| || ||||| ||||||||| ||||||| ||| || ||| ||| |||||| |||||| ||||||| | ||||| ||||||||| |||||| || |
|
|
| T |
6685136 |
gagatcaaaatcaaccagcaaaattggttctagcatgac-aaaacataagttcaatctcatgtataataggtctgaaata-aagcttaattaccaaactt |
6685233 |
T |
|
| Q |
432 |
cagctactctagactct |
448 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
6685234 |
cagctactcgagactct |
6685250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 43 - 291
Target Start/End: Original strand, 30821828 - 30822069
Alignment:
| Q |
43 |
ggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaacactccaaatc |
142 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||||| ||| || |||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
30821828 |
ggaacagaaattaagcaacaattataaataaccaagagtaagaact-------gattcagtacctaaatattcaacaagctattactaacactcttaatc |
30821920 |
T |
|
| Q |
143 |
aaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatccaaatcacggt |
242 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
30821921 |
aaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatccaaataactat |
30822020 |
T |
|
| Q |
243 |
gttggatggattgagaagacaatttcaaatatatgccagaaacaactcc |
291 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
30822021 |
gttgaatggattgagaagacaattttgaatatatgccagaaaaaactcc |
30822069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 33 - 280
Target Start/End: Original strand, 30812556 - 30812796
Alignment:
| Q |
33 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
132 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
30812556 |
agttgagctgggaacataaattaagcaacaattataaataaccaagagtaagaact-------gattcagtacctaaagattcaacaagctattactaac |
30812648 |
T |
|
| Q |
133 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatcc |
232 |
Q |
| |
|
|||| |||||| |||| | ||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
30812649 |
actcttaatcaacagggcaacatccaactgttatactaacatttcaaatcaaaaattggttgtacaaaactaatatcatacatgtaagctagtaatatcc |
30812748 |
T |
|
| Q |
233 |
aaatcacggtgttggatggattgagaagacaatttcaaatatatgcca |
280 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| |||| |||||| |
|
|
| T |
30812749 |
aaataactatgttgaatggactgagaagacaattttgaataaatgcca |
30812796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 12592521 - 12592717
Alignment:
| Q |
33 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
132 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||| | |||| | ||||||||||||||| |||||||||| ||| |
|
|
| T |
12592521 |
agttgagctgggaacagaaattaagcaataattatacataaccaagagaaagaatt-------gatgtagtacctaaagattcaataagctattactaac |
12592613 |
T |
|
| Q |
133 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatcc |
232 |
Q |
| |
|
| | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
12592614 |
aaactaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgataacatacatgtaagctagtaatatcc |
12592713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 33 - 312
Target Start/End: Original strand, 27810568 - 27810826
Alignment:
| Q |
33 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
132 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
27810568 |
agttgagatgggaacagaaattaagcaacaattataaataaccaagagtaagaact-------gatgcagtacctaaagattcaacaagctattactaac |
27810660 |
T |
|
| Q |
133 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagc--tagtaatat |
230 |
Q |
| |
|
|||| |||||||||||| || |||||| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
27810661 |
actctaaatcaaaagggcag----------------taacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctatagtaatat |
27810744 |
T |
|
| Q |
231 |
ccaaatcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcaca |
312 |
Q |
| |
|
|||||| || ||||| ||||| |||||| ||||||| |||||| |||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
27810745 |
ccaaataactatgttgaatggactgagaatacaattttgaatataagccagaaaaaactcccaagttaatccatacttcaca |
27810826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 2942576 - 2942525
Alignment:
| Q |
33 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaag |
84 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2942576 |
agttgagctgggaacagaaattaagcaacaatcatacataaccaagagtaag |
2942525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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