View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_31 (Length: 553)
Name: NF8889_low_31
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_31 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 152 - 534
Target Start/End: Original strand, 136199 - 136593
Alignment:
| Q |
152 |
ttccaggttgtctctttgttaatgttccatacaaatgctacatgttcaatatgttagagtaaattcttgtacatatatgaacacaaccatcattcattca |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
136199 |
ttccaggttgtctctttgttaatgttccatacaaatgctacatgttcaatatgttagagtaaattcttgtacatatatgaacacaaccatcattcattca |
136298 |
T |
|
| Q |
252 |
atcaatactttcccaacaaagaagttttttcaaatttcaattcaaatgaagg---nnnnnnnctctgatttgaattcaatgcatgcaaattatagttaaa |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
136299 |
atcaatactttcccaacaaagaagttttttcaaatttcaattcaaatgaaggaaaacaaaaactctgatttg-attcaatgcatgcagattatagttaaa |
136397 |
T |
|
| Q |
349 |
aaacactcattaaattcttctacatgcattaccttctccacaataattgtcagc----------tgggtccttttatcaaaaagcacgttgtgaagtttc |
438 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
136398 |
aaacacgcattaaattcttctacatgcattaccttctccacaataattgtcagctttttcatgttgggtccttttatcaaaaagcacgtggtgaagtttc |
136497 |
T |
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| Q |
439 |
attgctgaagcaaccaagttggtttcagataattaaattttaagggtggttttggtttcttagctaggctctcatcagctatgcttaagaccttga |
534 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
136498 |
attgctgaaacaaccaagttggtttcagataattaaattttaagggtggttttggttgcttagctaggctctcatcagctatgcttaagaccttga |
136593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 223 - 534
Target Start/End: Original strand, 20747407 - 20747721
Alignment:
| Q |
223 |
catatatgaacacaaccatcattcattcaatcaatactttcccaacaaagaagttttttcaaatttcaattcaaatgaaggnnnnnnn-ctctgatttga |
321 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20747407 |
catatatgaacacagccatcattcattcaatcaatactttcccaacaaagaagttttttcaaatttcaattcaaatgaaggaaaaaaaactctgatttga |
20747506 |
T |
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| Q |
322 |
attcaatgcatgcaaattatagttaaaa-aacactcattaaattcttctacatgcattaccttctccacaataattgtcagctgggtccttttatcaaaa |
420 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20747507 |
attcaatgcatgcagattatagttaaaaaaacactcattaaattcttctacatgcattaccttctccacaataattgtcagctgggtccttttatcaaaa |
20747606 |
T |
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| Q |
421 |
agcacgttgtgaagtttcattgctgaagcaaccaagtt-ggtttcagataattaaattttaagggtggttttggtttcttagctaggctctcatcagcta |
519 |
Q |
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|||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20747607 |
agcacgttgtgaagtttcattgttgaagcaagcaagttgggtttcagataattaaattttaagggtggttttggtttcttagctaggctctcatcagcta |
20747706 |
T |
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| Q |
520 |
tgcttaagaccttga |
534 |
Q |
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||||||||||||||| |
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| T |
20747707 |
tgcttaagaccttga |
20747721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 20747271 - 20747405
Alignment:
| Q |
19 |
tgttctattgtcgcttgctcaatgcataatcattggtgaaattcataagatcaatagtgaactataggtaacctagtggagaataggtaacaactagcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20747271 |
tgttctattgtcgcttgctcaatgcataatcattggtgaaattcataagatcaatagtgaactataggtaacctagtggagaataggtaacaactagcct |
20747370 |
T |
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| Q |
119 |
cactatagttacagaattgtaatttggacctattt |
153 |
Q |
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||||||||| ||| ||||||||||||||||||||| |
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| T |
20747371 |
cactatagtaacaaaattgtaatttggacctattt |
20747405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 84 - 530
Target Start/End: Complemental strand, 16907472 - 16907011
Alignment:
| Q |
84 |
aggtaacctagtggagaataggtaacaactagcctcactatagttacagaattgtaatttggacctatttccaggttgtctctttgttaatgttccatac |
183 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
16907472 |
aggtaacctagtggaagataggtaacaactagcctcactgtagtaacagaattagaatttagacctatttccaggttgtctctctattaatgttccatac |
16907373 |
T |
|
| Q |
184 |
aaatgctacatgttcaatatgttagagtaaattcttgtacatatatgaacacaaccatcattcattcaatcaatactttcccaacaaagaagttttttca |
283 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||| |||||| |
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| T |
16907372 |
aaatgctacatgttcaatatgtttgagtaaattcttgtacatatatcaacacaaccatcattcattcaatcaatactttcacagcaaacaag-tttttcg |
16907274 |
T |
|
| Q |
284 |
aatttcaattcaaatgaagg--nnnnnnnctctgatttgaattcaatgcatgcaaattatagttaaaaaacactcat--taaattcttctacatgcatta |
379 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||| || ||| ||||||||||| ||||||||| |
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| T |
16907273 |
aatttcaattcaagtgaagggaaaaaacactctgatttgaattcaatgcatgcacgttatagtgaaaaaaaacacataataaattcttctgcatgcatta |
16907174 |
T |
|
| Q |
380 |
ccttctccacaataattgtcagc----------tgggtccttttatcaaaaagcacgttgtgaagtttcattgctgaagcaaccaagttggtttca-gat |
468 |
Q |
| |
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|||||| |||||| || |||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| || ||||||||||||| ||| |
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| T |
16907173 |
ccttcttcacaatgatggtcagctttttcatgttgggtccttttatcaaagagcacgtggtgaagttttattgctgaaggaaacaagttggtttcatgat |
16907074 |
T |
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| Q |
469 |
aattaaattttaagggtggttt-tggtttcttagctaggctctcatcagctatgcttaagacc |
530 |
Q |
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|||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||| |
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| T |
16907073 |
aattaaattttaagggtggtttctagtttcttagctagggtctcatcaactatgcttaagacc |
16907011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 242 - 530
Target Start/End: Complemental strand, 28701320 - 28701019
Alignment:
| Q |
242 |
cattcattcaatcaatactttcccaacaaagaagttttttcaaatttcaattcaaatgaaggnnnnnnn--ctctgatttgaattcaatgcatgcaaatt |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||| |||||||||||||||||| |||||| ||| |
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| T |
28701320 |
cattcattcaatcaatactttcccagcaaagaagttttt-cgaacttcaattcaaatgaaggaaaaaaaaactctgatttgaattcaatacatgcacatt |
28701222 |
T |
|
| Q |
340 |
atagttaaaaaacactcattaaattcttctacatgcattaccttctccacaataattgtcagctg----------ggtccttttatcaaaaagcacgttg |
429 |
Q |
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| ||| ||||| ||| |||||||||| ||| |||||||||||||||||||||| ||||||| || ||||||||||| |||||| | || | |
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| T |
28701221 |
acagtgaaaaagcacgcattaaattcgtctgcatgcattaccttctccacaatgattgtcaactttttcatgttcggtccttttatgaaaaagtatgtgg |
28701122 |
T |
|
| Q |
430 |
tgaagtttcatt--gctgaagcaaccaagttggtttcagataattaaattttaagggtggttttggtttcttagctaggctctcatcagctatgcttaag |
527 |
Q |
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| T |
28701121 |
tgaagtatcattttgctgaagcaaccaagttggtttcagataattaaattttaagggtggttttggtttcttagctaggctcacataagctatgcttaag |
28701022 |
T |
|
| Q |
528 |
acc |
530 |
Q |
| |
|
||| |
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| T |
28701021 |
acc |
28701019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 28703024 - 28702954
Alignment:
| Q |
19 |
tgttctattgtcgcttgctcaatgcataatcattggtgaaattcataagatcaatagtgaactataggtaa |
89 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
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| T |
28703024 |
tgttctattgtcgcttgctcaatgcataatcactagtgaaattcataagatcaatagtgaagtataggtaa |
28702954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 28701366 - 28701323
Alignment:
| Q |
84 |
aggtaacctagtggagaataggtaacaactagcctcactatagt |
127 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28701366 |
aggtaacctagtggagtataggtaacaactagcctcactatagt |
28701323 |
T |
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