View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_33 (Length: 548)
Name: NF8889_low_33
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 212 - 532
Target Start/End: Complemental strand, 42122507 - 42122171
Alignment:
| Q |
212 |
gaattgaattaatgcttacctcctgaccttgctaaataattttgagaagcttgttagcagcttcttcgaaatctatacaagacatattggttaagtagat |
311 |
Q |
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| T |
42122507 |
gaattgaattaatgcttaccttcttaccttgctcaataattttgagaagcttgttagcagcttcttcgaaatctatacatgacatattggttaagtagat |
42122408 |
T |
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| Q |
312 |
tgagcatcgaagaatgataagattcatttcagtctcatcttagatctgc-atctcttcattatcttcatctgattcagcttcagaggtt----------- |
399 |
Q |
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| T |
42122407 |
tgagcgtcgaagattgataagattcatatcaatctcatcttagatctgcgatctcttcattatcttcatctgattcagcttcagaggtttcctcactctc |
42122308 |
T |
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| Q |
400 |
----tcctcacattcttctacctccttctagcccaaactctttagcttttcgtaacatttttcattattagtgtaattggggccgggttgaaatttatat |
495 |
Q |
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| T |
42122307 |
ctcatcctcacattcttctacctccttcttgcccaaactctttagctcttcgtaacgtttttcgttattcgcataattggggccgggttgaaatatatac |
42122208 |
T |
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| Q |
496 |
gaggaaaagaaaatgaaaaagtaagaaatcataatga |
532 |
Q |
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| T |
42122207 |
gaggaaaagaaaatgaaaaactaagaaatcataatga |
42122171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 42122742 - 42122561
Alignment:
| Q |
1 |
atggttcaaccatgaatcagaatcagatggtgcaaatggcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttcggtttaa |
100 |
Q |
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| T |
42122742 |
atggttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtttaa |
42122643 |
T |
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| Q |
101 |
aataagcttgattttgagtgtgacaatcttgccactcttatttagctagtttgattttggattgtaaagattatactctgaa |
182 |
Q |
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| T |
42122642 |
aataatcttgattttgagtgtgacaatcttgcgactcttatttagctagtttgatttcggattgtaaagtttatactctgaa |
42122561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42128137 - 42128045
Alignment:
| Q |
1 |
atggttcaaccatgaatcagaatcagatggtgcaaatggcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttc |
93 |
Q |
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| T |
42128137 |
atggttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttc |
42128045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 42116966 - 42116874
Alignment:
| Q |
14 |
gaatcagaatcagatggtgcaaatggcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttcggtttaaaataag |
106 |
Q |
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| T |
42116966 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttcttcttaaaataag |
42116874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11117399 - 11117277
Alignment:
| Q |
1 |
atggttcaaccatgaatcagaatcagatggtgcaaatggcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttcggtttaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11117399 |
atggttcaaacatgaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaa |
11117300 |
T |
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| Q |
101 |
aataagcttgattttgagtgtga |
123 |
Q |
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| T |
11117299 |
aataagcttgattttgagtgtga |
11117277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 11117224 - 11117166
Alignment:
| Q |
179 |
tgaaccaggttgtacatttaatttccacaaagagaattgaattaatgcttacctcctga |
237 |
Q |
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| T |
11117224 |
tgaaccaggttgtacatttaatttccacaaagagaattgaattaatgcttacctcctga |
11117166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 11117279 - 11117249
Alignment:
| Q |
152 |
tgattttggattgtaaagattatactctgaa |
182 |
Q |
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| T |
11117279 |
tgattttggattgtaaagattatactctgaa |
11117249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 8522346 - 8522250
Alignment:
| Q |
14 |
gaatcagaatcagatggtgcaaatggcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttcggtttaaaataagcttga |
111 |
Q |
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| T |
8522346 |
gaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaattattttctcttttgtctgttgggtttttactttctg-ttaaaacaagcttga |
8522250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 25523944 - 25524020
Alignment:
| Q |
95 |
gtttaaaataagcttgattttgagtgtgacaatcttgccactcttattt-----agctagtttgattttggattgtaa |
167 |
Q |
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| T |
25523944 |
gtttaaaataagcttgatgtt-agtgcgacaatctagtcactcttatttgatctagctagtttgattttgggttgtaa |
25524020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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