View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_35 (Length: 533)
Name: NF8889_low_35
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 4 - 426
Target Start/End: Original strand, 22594669 - 22595088
Alignment:
| Q |
4 |
agttggttgaacttcatttgttaccacaaccacatcaaacttttcacatccaagttgaagtttggttttgtagcttttatgaaattgcgacaaacaattg |
103 |
Q |
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| T |
22594669 |
agttggttgaacttcatgtgttaccacaaccacatcaaacgtttcacatccaagttgaagtttggttttgtagcttttatgaaattgcgacgaacaattg |
22594768 |
T |
|
| Q |
104 |
gttgaacctcgtgttttgccaaaatcacaacaagcttgctgcgtctaggtagaagtttggttttgtagcttttaagaaatcgcaacaaaagcaagggcgg |
203 |
Q |
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| T |
22594769 |
gttgaacctcatgttttgccaaaatcacaacaagcttgctgcgtctaggtagaagtttggttttgtagcttttaagaaatcgcaacaaaagcaagggcgg |
22594868 |
T |
|
| Q |
204 |
acatgtgtttggaaatgcgggcgcgcaacaaaacatacaccaagataaattatcgtgtttggaggtaaatataatccttaaagttaaaatcaatttcaaa |
303 |
Q |
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| T |
22594869 |
acatgtgtttggaaatgcgggcgcgcaacaaaacatacaccaagataaattatcgggtttggaggtaaatataatccttaaagttaaaatcaatttcaaa |
22594968 |
T |
|
| Q |
304 |
aaacaagaagnnnnnnnnntactaaaagcaactaaatatatgaaagtgaaatttatatttttaaaagcacttttataagttaatcagccataaagatttc |
403 |
Q |
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| T |
22594969 |
aaacaagaa--aaaaaaaatactaaaagcaactaaatatatgaaagtg-aatttatatttttaaaagcacttttataagtcaatcagccatgaagatttc |
22595065 |
T |
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| Q |
404 |
tttcataatgttttgcaacgaga |
426 |
Q |
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| T |
22595066 |
tttcataatgttttgcaacgaga |
22595088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 424 - 533
Target Start/End: Original strand, 22595262 - 22595371
Alignment:
| Q |
424 |
agacgtatgtgcttggatacacatttgtaaaatcacggcaaataactatattaacgcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
523 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22595262 |
agacgtatgtgcttggatacacgtttgcaaaatcacggcaaataactatattaactcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
22595361 |
T |
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| Q |
524 |
ttagtcatgt |
533 |
Q |
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|||||||||| |
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| T |
22595362 |
ttagtcatgt |
22595371 |
T |
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