View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_36 (Length: 509)

Name: NF8889_low_36
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_36
NF8889_low_36
[»] chr2 (3 HSPs)
chr2 (1-322)||(27162226-27162547)
chr2 (13-170)||(22911124-22911281)
chr2 (440-484)||(27162064-27162108)
[»] chr5 (2 HSPs)
chr5 (1-322)||(20955641-20955962)
chr5 (440-484)||(20956080-20956124)
[»] chr1 (4 HSPs)
chr1 (1-322)||(1976990-1977311)
chr1 (1-322)||(1984356-1984677)
chr1 (440-486)||(1984189-1984235)
chr1 (440-484)||(1976825-1976869)
[»] scaffold0764 (2 HSPs)
scaffold0764 (1-319)||(3108-3426)
scaffold0764 (447-497)||(2936-2986)
[»] scaffold0313 (4 HSPs)
scaffold0313 (1-319)||(3189-3507)
scaffold0313 (1-319)||(17346-17664)
scaffold0313 (447-497)||(3629-3679)
scaffold0313 (447-497)||(17786-17836)
[»] scaffold1531 (1 HSPs)
scaffold1531 (13-319)||(966-1272)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 27162547 - 27162226
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  27162547 atgagattcacatcaaaaactctagctcaactccacataaccacctccagcatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacact 27162448  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27162447 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 27162348  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27162347 agaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatataaatcttttccaagatattgctgaaaatgcaaaggaaatc 27162248  T
Q  301 cttcagcaaaatgcagaagatc 322  Q
    ||||||||||||||||||||||    
T  27162247 cttcagcaaaatgcagaagatc 27162226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 22911281 - 22911124
Alignment:
Q  13 tcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatg 112  Q
    |||||||| || |||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||| || ||||||||    
T  22911281 tcaaaaacccttgctcaacttcacataaccacctccaacatgcctactcctgtgtcctcacaaacaactagctatgtcaagagacacttagctcagaatg 22911182  T
Q  113 ttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattca 170  Q
    |||||||| ||||||||||||| || || || ||||||||||| || |||||||||||    
T  22911181 ttaagaagacaagtaagaagaggaaactagagaaagtcaggaacctatcaagcattca 22911124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 484
Target Start/End: Complemental strand, 27162108 - 27162064
Alignment:
Q  440 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27162108 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 27162064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 20955641 - 20955962
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  20955641 atgagattcacatcaaaaactctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacact 20955740  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20955741 cagttcagaatgttaagaagccaagtaagaagagaaagcttgagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactcttctgaaaa 20955840  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20955841 agaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaatcctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 20955940  T
Q  301 cttcagcaaaatgcagaagatc 322  Q
    ||||||||||||||||||||||    
T  20955941 cttcagcaaaatgcagaagatc 20955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 20956080 - 20956124
Alignment:
Q  440 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20956080 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 20956124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 1977311 - 1976990
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1977311 atgagattcacatcaaaaactctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 1977212  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1977211 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 1977112  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1977111 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatc 1977012  T
Q  301 cttcagcaaaatgcagaagatc 322  Q
    || || ||||||||||||||||    
T  1977011 ctgcaacaaaatgcagaagatc 1976990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 1984677 - 1984356
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1984677 atgagattcacatcaaaaactctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 1984578  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1984577 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 1984478  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1984477 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatc 1984378  T
Q  301 cttcagcaaaatgcagaagatc 322  Q
    || || ||||||||||||||||    
T  1984377 ctgcaacaaaatgcagaagatc 1984356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 1984235 - 1984189
Alignment:
Q  440 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgat 486  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  1984235 ttgctgcaatttctgaagaggaacttcagaatgttgactcaactgat 1984189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 484
Target Start/End: Complemental strand, 1976869 - 1976825
Alignment:
Q  440 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 484  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  1976869 ttgctgcaatttctgaagaggaacttcagaatgttgactcaactg 1976825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 3426 - 3108
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  |||||||| || ||||||||||| |||||||| |||||||||||| ||||||| ||||| || || ||||| |||||||||||||||||||    
T  3426 atgagattcacatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacact 3327  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  3326 cagctcagaatgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaa 3227  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
     || |  |||||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| ||||||    
T  3226 agaggcatctgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatc 3127  T
Q  301 cttcagcaaaatgcagaag 319  Q
    |||||  || |||||||||    
T  3126 cttcaagaagatgcagaag 3108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 2986 - 2936
Alignment:
Q  447 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 497  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  2986 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 3189 - 3507
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  |||||||| || ||||||||||| |||||||| |||||||||||| ||||||| ||||| || || ||||| |||||||||||||||||||    
T  3189 atgagattcacatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacact 3288  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  3289 cagctcagaatgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaa 3388  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
     || |  |||||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| ||||||    
T  3389 agaggcatctgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatc 3488  T
Q  301 cttcagcaaaatgcagaag 319  Q
    |||||  || |||||||||    
T  3489 cttcaagaagatgcagaag 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 17346 - 17664
Alignment:
Q  1 atgagatggacatcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacact 100  Q
    |||||||  |||||||| || ||||||||||| |||||||| |||||||||||| ||||||| ||||| || || ||||| |||||||||||||||||||    
T  17346 atgagattcacatcaaagaccctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacact 17445  T
Q  101 cagttcagaatgttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaa 200  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  17446 cagctcagaatgttaagaagccaagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaa 17545  T
Q  201 ggaagagtctgatgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatc 300  Q
     || |  |||||||| || || |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| ||||||    
T  17546 agaggcatctgatgaagagatagctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatc 17645  T
Q  301 cttcagcaaaatgcagaag 319  Q
    |||||  || |||||||||    
T  17646 cttcaagaagatgcagaag 17664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 3629 - 3679
Alignment:
Q  447 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 497  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  3629 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 497
Target Start/End: Original strand, 17786 - 17836
Alignment:
Q  447 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 497  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  17786 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 17836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1531 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold1531
Description:

Target: scaffold1531; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 966 - 1272
Alignment:
Q  13 tcaaaaactctagctcaactccacataacaacctccaacatgtctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatg 112  Q
    ||||| ||||| ||||||||  ||||||| |||||||||||| |||| |||||||| |||||||||||||||||| |||| |||||||||| ||||||||    
T  966 tcaaagactctcgctcaacttaacataaccacctccaacatgcctacccctgtgtcttctcaaacaactagctctttcaagagacactcagctcagaatg 1065  T
Q  113 ttaagaagccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctga 212  Q
    | |||||| ||| ||||||||| || ||||| |||||||||||  | |||||| |||| ||| |  | ||  | ||||||||  |||| ||||  ||| |    
T  1066 tcaagaagtcaaataagaagaggaaacttgagaaagtcaggaacttatcaagcgttcagagagataaagagaagaactctccctaaaaagaagcatctaa 1165  T
Q  213 tgatgaaatggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaat 312  Q
    |||||| |||||||| || |||| |||||||||||||||| ||| ||| ||||| |||||||  |||||||||  |||||  ||||||||||| ||||||    
T  1166 tgatgagatggctgactctccactaaaggatggtgaacccactgctgttaatctcttccaaggaattgctgaacgtgcaagagaaatccttcaacaaaat 1265  T
Q  313 gcagaag 319  Q
    |||||||    
T  1266 gcagaag 1272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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