View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_39 (Length: 504)
Name: NF8889_low_39
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 38829442 - 38829885
Alignment:
| Q |
19 |
gagagatgggttcagaagcaaactttgccgcagcctccataccaaagtttgacggcgactacgatcattggagcatggtcatggagaatctccttcgatc |
118 |
Q |
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| T |
38829442 |
gagagatgggttcagaagcaaactttgctgcaacctccataccgaagtttgacggcgactacgatcattgga-------------gaatctccttcgata |
38829528 |
T |
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| Q |
119 |
caaagagtattaggttgccgtcgaatcaggatacacagagccaacaagtagagatgggatgaccgcagtgcaaataaagaatctggatgagatgaagctg |
218 |
Q |
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| T |
38829529 |
caaagagtattgggttgctgccgaatcaggatacacagtgccaacaagtagagatgggatgaccgcagtgcaaataaagaatctggatgacatgaagctg |
38829628 |
T |
|
| Q |
219 |
aaggatttgaaggctaagaattacttgtttcagtcaattgacaagtcaattctaaagaccatcacgcagaaggagacatctaaacagctatgggattcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
38829629 |
aaggatttgaaggctaagaattacttgtttcagttaattgacaagtcaattctgaagacgaacacgcagaaggagacatctaaacggctatgggattcca |
38829728 |
T |
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| Q |
319 |
tgaagttgaagtgtcgcggcaatgctcgagtgaagagagcacagctcaatcgtctacgccgagactttgaggtcttagcaatgaagcagggtgaatcgat |
418 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38829729 |
tgaagttgaagtgtcgcgacaatgctcgagtgaagagagcacaactcaatcatctacgccgagactttgaggtcttagcaatgaagcagggtgaatcaat |
38829828 |
T |
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| Q |
419 |
cattgattattttggtcgagtaatgacggttgcaaacgacatgaggaattatgggga |
475 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38829829 |
cactgattattttggtcgagtaatgacggttgcaaacgacatgaggaattatgggga |
38829885 |
T |
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