View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_4 (Length: 1095)
Name: NF8889_low_4
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 3308117 - 3308580
Alignment:
| Q |
20 |
aagacgagtagcctgaagaatcacagaaacaccgcgagcagcttcagaagccattataaaatgattatcaacttcactcaacacttgaatcatatccata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308117 |
aagacgagtagcctgaagaatcacagaaacaccgcgagcagcttcagaagccattataaaatgattatcaacttcactcaacacttgaatcatatccata |
3308216 |
T |
|
| Q |
120 |
ttcactctctctttcactcttccaacaacttcttcatcaccatcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308217 |
ttcactctctctttcactcttccaacaacttcttcatcaccatcaccatcctcttcctcttccacaaccatgtctgattcaaactccggcatggtaatag |
3308316 |
T |
|
| Q |
220 |
cacgccggagagcagcaggcaaatcaggaagaggaggaggaggcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308317 |
cacgccggagagcagcaggcaaatcaggaagaggaggaggaggcaaaggaacatcataagaaggagagaataaaagattttgttgttgttctccttgtgc |
3308416 |
T |
|
| Q |
320 |
aaaatctatgagagccgcgccggtgttcttgagtgaggcggcgtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaag |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308417 |
aaaatctatgagagccgcgccggtgttcttgagtgaggctgcgtaggaggaatgcgcagccgcgaagttgttacgggcggcaaccgcctgtttcatgaag |
3308516 |
T |
|
| Q |
420 |
taatgacggtctttacaacttgttatggcttcttcattctccgtttttgattggaaacaaccca |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3308517 |
taatgacggtctttacaacttgttatggcttcttcattctccatttttgattggaaacaaccca |
3308580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 517 - 1080
Target Start/End: Original strand, 3308616 - 3309184
Alignment:
| Q |
517 |
gaaattgttgaatattgaaggctagtgcttaacgtgcgtgatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtgg |
616 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308616 |
gaaattgttgagtatagaaggccagtgcttaacgtgtgtcatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtgg |
3308715 |
T |
|
| Q |
617 |
agaatgttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacg |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3308716 |
agaatgttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacg |
3308815 |
T |
|
| Q |
717 |
ttaaggtaacaaaacgatgccgttttggagtatatnnnnnnnnnnnnnnnnttagtttgagtatccaaactcaaactagcatatgttttttatgtataca |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3308816 |
ttaaggtaacaaaacgatgccgttttggagtatataaaaaaaattaaaaaattag--tgagtatccaaactcaaagtagcatatgttttttatgtataca |
3308913 |
T |
|
| Q |
817 |
ctccgacgagcaaatcataaatcacaaattaaacaactttagtatctggtatctatcatttatctctgac-attaacaatcatcttaattgatatatttt |
915 |
Q |
| |
|
|| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3308914 |
ctgtgaagatcaaatcataaatcacagattaaacaactttagtatctggtatctatcatttatctctgacgattaacaatcatctcaattgatatatttt |
3309013 |
T |
|
| Q |
916 |
ctgtatatgtattagcacgttaatgatgttaaacaaagcttaaagtca------aaagtgaaagtttgtttgaatgtgcatggaattgcatctgttgact |
1009 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3309014 |
ctatatatgtattagcacgttaacgatgttaaacaaagcttaaagtcaaaagtgaaagtgaaagtttgtttgaatgtgcatggaattgcacctgttgact |
3309113 |
T |
|
| Q |
1010 |
tggcaactgttggtgctggaactgtcgcgtcttaaaagtattgttatggatttctaaactatcgtatttga |
1080 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3309114 |
tggcagctgttggttctggaattgtcgcgtcttaaaagttttgttatggatttctaaactatcgtatttga |
3309184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 964 - 1019
Target Start/End: Complemental strand, 3227842 - 3227787
Alignment:
| Q |
964 |
aaagtgaaagtttgtttgaatgtgcatggaattgcatctgttgacttggcaactgt |
1019 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3227842 |
aaagtgaaagttcgtttgaatgtgcatggaattgcatctgttgacttggcaactgt |
3227787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University