View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_44 (Length: 475)
Name: NF8889_low_44
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_44 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 6465085 - 6464618
Alignment:
| Q |
1 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6465085 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
6464986 |
T |
|
| Q |
101 |
ggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataaggtggttggtgttctttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464985 |
ggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataaggtggttggtgttctttgg |
6464886 |
T |
|
| Q |
201 |
gctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464885 |
gctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattct |
6464786 |
T |
|
| Q |
301 |
tattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464785 |
tattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgc |
6464686 |
T |
|
| Q |
401 |
cttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464685 |
cttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
6464618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 6473469 - 6473936
Alignment:
| Q |
1 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||| ||| |||||||| ||| | | ||| || || |||||||||||||||||| |
|
|
| T |
6473469 |
gtactagtgaagccgtgaatgcatactattctgcagcgttgatcggtatggcatataacgatgcagaactcacagcgaatgcatcgacacttacatcatt |
6473568 |
T |
|
| Q |
101 |
ggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataaggtggttggtgttctttgg |
200 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||||| ||||| ||| | || || || | |||| | |||||||||| | || | || ||||| ||| |
|
|
| T |
6473569 |
ggaaattcttgctgctaaaatgtggtggcatgtaaaagaaggagagaatctctatgaggaagattttacaaaagagaataggatgatgggagttctatgg |
6473668 |
T |
|
| Q |
201 |
gctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||| | | |
|
|
| T |
6473669 |
tctaacaagagagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttt |
6473768 |
T |
|
| Q |
301 |
tattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgc |
400 |
Q |
| |
|
| |||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
6473769 |
tgttttcagatgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaatagggaaggtgttgaagaaggatggaaaggttttgtctatgc |
6473868 |
T |
|
| Q |
401 |
cttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||| |||| ||| |||||| | |||||||||| |
|
|
| T |
6473869 |
attgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
6473936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 83 - 468
Target Start/End: Complemental strand, 6526041 - 6525656
Alignment:
| Q |
83 |
atcgacacttacatcattggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataag |
182 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||||||| |||| ||| | || || | || ||| ||| | |||||| |
|
|
| T |
6526041 |
atcgacacttgcatcatttgaaattcttgctgctaaaatgtggtggcatgtaaaagaaggagggaatatgtatgagaaagtgtttagtaaaaacaataag |
6525942 |
T |
|
| Q |
183 |
gtggttggtgttctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgc |
282 |
Q |
| |
|
| ||||||| |||||| | ||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6525941 |
ataattggtgtactttggtcgaacaaaagagacagtggtttatggtttggtccagctgaatggaaagaatgtaggcttgggattcagctcttaccattgc |
6525842 |
T |
|
| Q |
283 |
ttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatg |
382 |
Q |
| |
|
|||||||||||||| |||| || || ||||| | |||||||| |||||||||||||||||| |||||||| || ||||| ||||||| ||| || || |
|
|
| T |
6525841 |
ttccaatttctgaagtcttgttctctgatgttatgtatgtgaagggacttgtggagtggacattacctgctttaaaaagggatggtgttgaagagggttg |
6525742 |
T |
|
| Q |
383 |
gaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
||| |||||||| ||||||||| |||| |||||||||||||||||| | | |||||||||||| ||||| ||||||||||||| |
|
|
| T |
6525741 |
gaaggggtttgtttatgccttgcaagggatttatgataatgaaagtgcacagcagaagataagaaagttgaagggttttgatgatg |
6525656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 193 - 468
Target Start/End: Original strand, 6462439 - 6462714
Alignment:
| Q |
193 |
ttctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttc |
292 |
Q |
| |
|
|||| ||| ||||||||||||| |||||| | ||||||||||| ||||||| | ||||||||| ||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
6462439 |
ttctatggtctaacaagagagaaagtggactttggtttgctccacctgaatatagagaatgtagacttggaattcagctcttaccattggttcctatttc |
6462538 |
T |
|
| Q |
293 |
tgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggttt |
392 |
Q |
| |
|
|||| | || || || ||||||| | ||||||| ||||||| || |||||||||||||||||||| || || ||||||| ||||||||||||||||||| |
|
|
| T |
6462539 |
tgaagtattgttctctgatgttgaatatgtgaagcaacttgttgaatggacattgcctgctttgaaaagagatggtgttgaagaaggatggaaagggttt |
6462638 |
T |
|
| Q |
393 |
gtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
|| ||||| || ||||| |||||||||| |||| || ||||||||| ||||||| || || || |||||||||| |
|
|
| T |
6462639 |
gtatatgctttacaaggaatttatgataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatg |
6462714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 204 - 468
Target Start/End: Complemental strand, 6496222 - 6495958
Alignment:
| Q |
204 |
aacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttat |
303 |
Q |
| |
|
||||||||||| |||||| | ||||||||||| || |||| |||||||||||| |||| |||||||||||||||||||||| ||||||||| | || | |
|
|
| T |
6496222 |
aacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgt |
6496123 |
T |
|
| Q |
304 |
tttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgcctt |
403 |
Q |
| |
|
| || |||| || | ||||||| ||||||| || ||| |||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
6496122 |
tctctgatgtcgaatatgtgaagcaacttgttgaatgggcattgcctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgcctt |
6496023 |
T |
|
| Q |
404 |
ggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||| ||||||| || || || |||||||||| |
|
|
| T |
6496022 |
acaaggaatttatgataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatg |
6495958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 210 - 465
Target Start/End: Complemental strand, 6505023 - 6504765
Alignment:
| Q |
210 |
agagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaa |
309 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||||| |||| |||| || |||||||| |||||||| ||| ||||||||| || ||||| |
|
|
| T |
6505023 |
agagatagtggactttggtttgctccacctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctg |
6504924 |
T |
|
| Q |
310 |
atgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtg---ttggagaaggatggaaagggtttgtctatgccttgga |
406 |
Q |
| |
|
||||||||| ||| || || ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || || | ||| | ||||| |
|
|
| T |
6504923 |
atgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatattcattgga |
6504824 |
T |
|
| Q |
407 |
aggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatg |
465 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6504823 |
aggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6504765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 6457125 - 6456658
Alignment:
| Q |
1 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||| |||| || |||||||| || || |||| ||||| ||||| || || | |
|
|
| T |
6457125 |
gtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatggcgtacggcgacacacaacttattgcgaccggatcaacactagcagcact |
6457026 |
T |
|
| Q |
101 |
ggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataaggtggttggtgttctttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||| |||| | || | ||| | |||||||| || || || ||||| ||||| |
|
|
| T |
6457025 |
tgaaattcatgcagctcaaatgtggtggcatataaaaggcggagataaactttatgctgaagaattttccaaagagaacaaagtagtgagtgttgtttgg |
6456926 |
T |
|
| Q |
201 |
gctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattct |
300 |
Q |
| |
|
|||| |||||||| |||||| |||||||||| ||| || |||||| ||| |||||||| || ||||| | ||||| ||| | || || | || | |
|
|
| T |
6456925 |
tctaataagagagatagtggactatggtttgcgcctgctcaatggagagagtgtaggctaggtattcaagttttacctttgttgcctatcaccgaggcat |
6456826 |
T |
|
| Q |
301 |
tattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgc |
400 |
Q |
| |
|
| ||||| |||||| || ||| ||||| |||||||| |||||||| ||| |||||||||| |||||||||| ||||| |||||||| ||| | ||||| |
|
|
| T |
6456825 |
tgttttcggatgttggttatgtaaaggagcttgtggaatggacattacctaatttgaataggaaaggtgttggtgaagggtggaaaggttttatatatgc |
6456726 |
T |
|
| Q |
401 |
cttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
||||||| ||||||||| |||||| ||| | ||| ||||| | ||||| ||||||||||||| |
|
|
| T |
6456725 |
tatggaaggtacttatgataaacaaagtgctttgcaaaaggtaagaggattgaagggttttgatgatg |
6456658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 273 - 465
Target Start/End: Original strand, 6516811 - 6517003
Alignment:
| Q |
273 |
ttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttg |
372 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| ||||||||| |||||| |||||||| |||||| |||||||| |||| || | | ||||| || |
|
|
| T |
6516811 |
ttaccattgtgtccaatttctgaagttttattttctgatgttgattatgtgaaagaacttgttgagtgggcattgcctcctttcaaaacgttaggtgctg |
6516910 |
T |
|
| Q |
373 |
gagaaggatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatg |
465 |
Q |
| |
|
| | |||||| || ||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516911 |
aaaacagatggacgggatttcggtatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6517003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 350
Target Start/End: Original strand, 1842357 - 1842529
Alignment:
| Q |
177 |
aataaggtggttggtgttctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttac |
276 |
Q |
| |
|
|||||||| || ||||||| ||| ||||||| ||||||| ||| ||||||||| |||| |||| |||||||||||| |||| || ||||||||||||| |
|
|
| T |
1842357 |
aataaggttattagtgttctgtggtctaacaaaagagaca-tggtctatggtttggtcctgctgagtggaaagaatgttggctcggcattcagctcttac |
1842455 |
T |
|
| Q |
277 |
cattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcct |
350 |
Q |
| |
|
|| | || || ||||||||| | || | || ||||| | | |||||||| |||||||||||||||||||||| |
|
|
| T |
1842456 |
cactactccctatttctgaaattttgtcctctgatgttaagtatgtgaagggacttgtggagtggacattgcct |
1842529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 1832345 - 1832441
Alignment:
| Q |
190 |
gtgttctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttcc |
286 |
Q |
| |
|
||||||||||| || |||| ||||||||||| ||||||||| |||| |||| |||||||||||| |||| || ||||||||||||||||| ||||| |
|
|
| T |
1832345 |
gtgttctttggtcttacaaaagagacagtggtctatggtttggtcctgctgagtggaaagaatgtcggctcggcattcagctcttaccatttcttcc |
1832441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 6505232 - 6505100
Alignment:
| Q |
1 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||| | |||||||| || |||| || || | ||||||| ||||| |||||||| |
|
|
| T |
6505232 |
gtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatagcatatggtgattctcaacttgtgtccattggatcaacactaacatcatt |
6505133 |
T |
|
| Q |
101 |
ggaaattcatgcagctcaaatgtggtggcatgt |
133 |
Q |
| |
|
|||||||| || | | |||||||||||||||| |
|
|
| T |
6505132 |
ggaaattcttggaaccaaaatgtggtggcatgt |
6505100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 6516533 - 6516665
Alignment:
| Q |
1 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| || ||||| |||||||||| || |||| || || || ||| ||| ||||| |||||||| |
|
|
| T |
6516533 |
gtactagtgaagctgtgaatgcatactatgctgcagccttaatgggaatggcatatggtgatcctcaacttgtgtcaattgcatcaacactaacatcatt |
6516632 |
T |
|
| Q |
101 |
ggaaattcatgcagctcaaatgtggtggcatgt |
133 |
Q |
| |
|
|||||||| || | | |||||||||||||||| |
|
|
| T |
6516633 |
ggaaattcttggaaccaaaatgtggtggcatgt |
6516665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 421
Target Start/End: Original strand, 6521255 - 6521419
Alignment:
| Q |
257 |
gcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttg |
356 |
Q |
| |
|
|||||| |||||| | |||||||||||||| ||||| ||| | || ||||| ||||||| ||||||||||| ||||||| ||| ||||||| |||| |
|
|
| T |
6521255 |
gcttggcattcaggttttaccattgcttcctatttcagaaatgttgttttctgatgttgaatttgtgaaggatgttgtggaatgggtgttgcctgatttg |
6521354 |
T |
|
| Q |
357 |
aatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagtttatgataa |
421 |
Q |
| |
|
| || || |||||||| ||||||||||| || ||||| ||||| || | ||| |||||||||| |
|
|
| T |
6521355 |
gaaagtgatggtgttggtgaaggatggaagggatttgtgtatgctttaaagggaatttatgataa |
6521419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 373
Target Start/End: Original strand, 13054173 - 13054292
Alignment:
| Q |
254 |
taggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgct |
353 |
Q |
| |
|
||||||||| ||| || | ||||||||| ||||| ||||||| | |||||||| ||||| || ||||||| | |||||||| | ||| |||||| | |
|
|
| T |
13054173 |
taggcttggtatttaggtattaccattgtgtccaaattctgaagttttattttctgatgttacttatgtgaagaatcttgtggaacgtacaatgcctgat |
13054272 |
T |
|
| Q |
354 |
ttgaatagggaaggtgttgg |
373 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
13054273 |
ttgaaaagggaaggtgttgg |
13054292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 1836141 - 1836206
Alignment:
| Q |
195 |
ctttgggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggctt |
260 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| ||| |||| |||||||||||| ||||| |
|
|
| T |
1836141 |
ctttggtctaacaaaagagacagtggtctatggtttggtccagctgagtggaaagaatgtcggctt |
1836206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 1846158 - 1846085
Alignment:
| Q |
223 |
tatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaa |
296 |
Q |
| |
|
||||||||| |||| | || |||||||||||| ||||||| ||| ||||||| ||||| |||| ||||||||| |
|
|
| T |
1846158 |
tatggtttggtcctgcagagtggaaagaatgtcggcttggcattgagctcttgccattttttcctatttctgaa |
1846085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 1847044 - 1847085
Alignment:
| Q |
243 |
tggaaagaatgtaggcttgggattcagctcttaccattgctt |
284 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
1847044 |
tggaaagaatgtcggctcggaattcagctcttaccattgctt |
1847085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 6527744 - 6527695
Alignment:
| Q |
202 |
ctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaa |
251 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||||||| |||| |
|
|
| T |
6527744 |
ctaacaagagagacagtggattgtcgtttgctccggctgaatggagagaa |
6527695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46383173 - 46382867
Alignment:
| Q |
1 |
gtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgacactcatctcgttgcagttggatcgacacttacatcatt |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||| || | ||||||| ||| | | ||||| ||| || |||||||||||| |||| |
|
|
| T |
46383173 |
gtactagtgaaactttgaatgcatactattctgcagctttgatcagtattgcatatgacgatgcagaactcgtagcaactgcttcgacacttacaccatt |
46383074 |
T |
|
| Q |
101 |
-ggaaattcatgcagctcaaatgtggtggcatgtaaaaggtggagataatgtttacgacgaggtttttgcgaaagagaataaggtggttggtgttctttg |
199 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||| ||||| || ||| | || || | || || ||||||||||||| ||||| | ||||| |
|
|
| T |
46383073 |
tggaaattcttgctgctaaaatgtggtggcatgtgaaaggaaaagtgaatatgtatgataaagtgttcagtgaagagaataaggtaattggtatactttg |
46382974 |
T |
|
| Q |
200 |
ggctaacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattc |
299 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||| ||| || | ||||| ||| |||| |||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
46382973 |
gtctaacaaaagagacagtggtctatggtttggtccagctaagtggaaggaacgtagccttgggattcagctcttaccattgtttcctatttctgaagtc |
46382874 |
T |
|
| Q |
300 |
ttatttt |
306 |
Q |
| |
|
|| |||| |
|
|
| T |
46382873 |
ttgtttt |
46382867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 4045981 - 4045922
Alignment:
| Q |
4 |
ctagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgaca |
63 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||| | ||||| ||||||||||||| |
|
|
| T |
4045981 |
ctagtgaagctgtgaatgcgtactattcagtagcattggttggtttagcatatggcgaca |
4045922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 3754259 - 3754316
Alignment:
| Q |
6 |
agtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgaca |
63 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
3754259 |
agtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgaca |
3754316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 3754632 - 3754700
Alignment:
| Q |
379 |
gatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaa |
447 |
Q |
| |
|
|||||||||||||| ||||| | ||| ||||| |||||||||| |||| || |||||||||||| |||| |
|
|
| T |
3754632 |
gatggaaagggtttatctattctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaa |
3754700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 468
Target Start/End: Complemental strand, 4045610 - 4045517
Alignment:
| Q |
375 |
gaaggatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
468 |
Q |
| |
|
||||| |||||||||||| |||||| ||| |||| ||||||||||| | | || ||||||||| || |||| ||||| ||||||||||||| |
|
|
| T |
4045610 |
gaaggttggaaagggtttacctatgctttgcaaggtgtttatgataagaagaatgcattgaagaatattagaatgttgaaaggttttgatgatg |
4045517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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