View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_45 (Length: 474)
Name: NF8889_low_45
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 4308146 - 4307685
Alignment:
| Q |
13 |
tggtgttatgtcatacctttaagccaaactttacatgactagtatctaagccagtaaaataggagagttgtattaagaaatcaatatccgacattaatca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4308146 |
tggtgttatgtcatacctttaagccaaactttacatgactagtatctaagccagtaaaataggagagttgtattaagaaatcaatatccaacattaatca |
4308047 |
T |
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| Q |
113 |
ataatacaacggcaccgatactaagtcattacccatgtgtgaagnnnnnnnnnnnnnnnntcaaataagtcattacccttgtgtgacacactatgtagct |
212 |
Q |
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| T |
4308046 |
ataatacaacggcaccgatactaagtcattacccatgtgtgaagaaaaaaaacaaaaaaatcaaataagtcattacccttgtgtgacacactatgtagct |
4307947 |
T |
|
| Q |
213 |
caagtatagttaatgagcaagagctgagccattacaccagcttacaaaattagtgcaaacaggcatgttaaaatttttagtaaatattggttacgatgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307946 |
caagtatagttaatgagcaagagctgagccattacaccagcttacaaaattagtgcaaacaggcatgttaaaatttttagtaaatattggttacgatgaa |
4307847 |
T |
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| Q |
313 |
aattcaagccacacatggaacagggaatcatttctgcgtcatttgcttcgctctggtcatagaacaccagttagtaacttagtatttttcactatcgtct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
4307846 |
aattcaagccacacatggaacagggaatcatttctgcgtcatttgcttcgctctggtcatagaacaccagttagtaacttggtattcttcactatcgtct |
4307747 |
T |
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| Q |
413 |
aattccttctcttatggccctctaaattctgtcttaatctaaatcccttccactaatctcaa |
474 |
Q |
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| T |
4307746 |
aattccttctcttatggccctctaaattctgtcttaatctaaatcccttccactaatctcaa |
4307685 |
T |
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