View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_46 (Length: 463)
Name: NF8889_low_46
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 447
Target Start/End: Complemental strand, 35093395 - 35092964
Alignment:
| Q |
9 |
agcagcacagatgcaggtaaagaggactgaagccccactagaaaatcaggcaccgtaaggcgatgcagatctccttataactatatagacaacacaacta |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35093395 |
agcagcacagatgcatataaagaggactgaagccccactagaaaatcaggcaccgtaaggcgatgcagatctccttataactatatagacaacacaacta |
35093296 |
T |
|
| Q |
109 |
catctgctgactttaatattaaacctgattaattacctttcctagagcgggcatgcatcaaaaagtataatttgactaatttatattgtatatatagtaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35093295 |
catctgctgactttaatattaaacctgattaattacctttcctagagcgggcatgcatcaaaaagtataatttgactaatttatattgtatatat-gtaa |
35093197 |
T |
|
| Q |
209 |
ttttcaatcaactccaaaattctacacaatctcaaaccaacctacccaagtaaacttgcatttgctggaattgatgagcttcccgtgcctgcaccctcag |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35093196 |
ttttcaatcaactccaaaattctatacaatctcaaaccaacctacccaagtaaacttgcatttgctggaattgatgagcttcccgtgcctgcaccctcag |
35093097 |
T |
|
| Q |
309 |
tagcctctagatttgtctataagagagagacagataagagcatgagcatgagcatgaggaacacaaattaccaatagaggggaaaagacaaattgtcacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35093096 |
tagcctctagatttgtctataagagagagacagataa------gagcatgagcatgaggaacacaaattaccaatagaggggaaaagacaaattgtcacc |
35093003 |
T |
|
| Q |
409 |
aataagcttagagctgaagatcatcactatttgtgatgt |
447 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
35093002 |
aataagtttagagctgaagatcatcactatttgttatgt |
35092964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 437
Target Start/End: Complemental strand, 32584495 - 32584302
Alignment:
| Q |
242 |
aaaccaacctacccaagtaaacttgcatttgctggaattgatgagcttcccgtgcctgcaccctcagtagcctct---agatttgtctataagagagaga |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||| |||| | |||||||||||| ||| ||| |
|
|
| T |
32584495 |
aaaccaacttacccaagtaaacttgcatttcctggaattgatgaacttccatcgcttgcacccccagtagtctctgccatatttgtctataatagaaaga |
32584396 |
T |
|
| Q |
339 |
cagataagagcatgagcatgagcatgaggaacacaaattaccaatagaggggaaaagacaaattgtcaccaataagc-ttagagctgaagatcatcacta |
437 |
Q |
| |
|
|||| || |||||||| |||||||||||||||| || | || ||||||| | ||||| ||| | |||||| |||||||||||||||||||||| |
|
|
| T |
32584395 |
cagaaaa------gagcatgaacatgaggaacacaaataacaagtaaaggggaacatacaaaatgttaatgataagctttagagctgaagatcatcacta |
32584302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University