View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_47 (Length: 462)
Name: NF8889_low_47
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_47 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 41387288 - 41386837
Alignment:
| Q |
1 |
aaattttgctacattgctataacgattatttaacaaacaccgaagagaaaacagaaaagatacatagccaaatcgcttcttcaggaaaaattgtgaaact |
100 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41387288 |
aaatttcgctacattgctataactattatttaacaaacaccgaagagaaaacagaaaagatacatagccaaatcgcttcttcaggaaaaattgtgaaact |
41387189 |
T |
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| Q |
101 |
agaatcacatttgtactttaccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccattgtctttcaaaatctgcac |
200 |
Q |
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| T |
41387188 |
agaatcacatttgtactttaccttaaccattcctgttccattatcacagaccagtggctgaatatcctcggcgtctgccattgtctttcaaaatctgcac |
41387089 |
T |
|
| Q |
201 |
aaaccatacattccttctcactgcattgaaagacaacaccaagtgcaattccaaacaattt---tnnnnnnnncatgttaaattttctcaccattactta |
297 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
41387088 |
aaaccatacattccttctcagtgcattgaaagacaacaccaagtgcaattccaaacaatttaaaaaaaaaaaacatcttaaattttctcaccattactta |
41386989 |
T |
|
| Q |
298 |
ttacatctatttctacacctcactaattattttcttacacttatcacactatttagattaccataacatgtttggcacattatatcacaatcacattatg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41386988 |
ttacatctatttctacacctcactaattattttcttacacttat--cactatttagattaccataacatgtttggcacaatatatcacaatcacattatg |
41386891 |
T |
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| Q |
398 |
tagaactcttaaaagcaatttagatatttttgttttgttttaaataacacgaaa |
451 |
Q |
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| T |
41386890 |
tacaactcttcaaagcaatttagatatttttgttttgttttaaataacatgaaa |
41386837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 66451 - 66388
Alignment:
| Q |
119 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccatt |
182 |
Q |
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| T |
66451 |
taccttaaccattccagttccattatcacaaacaagaggttgaatatcctcagcatctgccatt |
66388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 8688093 - 8688026
Alignment:
| Q |
119 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccattgtct |
186 |
Q |
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| T |
8688093 |
taccttaaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccatcgtct |
8688026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 60453 - 60515
Alignment:
| Q |
119 |
taccttaaccattcctgttccattatcacagaccagtggctgaatatcctccgcgtctgccat |
181 |
Q |
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| T |
60453 |
taccttgaccattccagttccattgtcacaaacaagaggttgaatatcctcagcgtctgccat |
60515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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