View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_50 (Length: 459)

Name: NF8889_low_50
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_50
NF8889_low_50
[»] chr5 (10 HSPs)
chr5 (358-429)||(41882235-41882306)
chr5 (359-429)||(27261427-27261497)
chr5 (359-429)||(28396417-28396487)
chr5 (359-429)||(31174027-31174097)
chr5 (136-245)||(33938146-33938258)
chr5 (360-429)||(27265616-27265685)
chr5 (359-429)||(28392339-28392409)
chr5 (359-429)||(31170155-31170225)
chr5 (359-429)||(41873327-41873397)
chr5 (358-429)||(24089396-24089467)
[»] chr8 (17 HSPs)
chr8 (358-429)||(24512834-24512905)
chr8 (361-429)||(6334111-6334179)
chr8 (359-429)||(1660000-1660070)
chr8 (359-429)||(12880669-12880739)
chr8 (359-429)||(14033524-14033594)
chr8 (358-429)||(36797721-36797792)
chr8 (359-429)||(417555-417625)
chr8 (359-429)||(23712605-23712675)
chr8 (359-429)||(24516969-24517039)
chr8 (359-429)||(36804005-36804075)
chr8 (360-429)||(413432-413501)
chr8 (360-429)||(14029629-14029698)
chr8 (359-428)||(37404623-37404692)
chr8 (359-429)||(1656170-1656240)
chr8 (363-429)||(12876976-12877042)
chr8 (358-413)||(27276805-27276860)
chr8 (359-429)||(6337995-6338065)
[»] chr7 (7 HSPs)
chr7 (358-429)||(31297632-31297703)
chr7 (358-429)||(31297990-31298061)
chr7 (359-429)||(5094165-5094235)
chr7 (359-429)||(5098337-5098407)
chr7 (360-429)||(24050566-24050635)
chr7 (359-429)||(39751447-39751517)
chr7 (360-420)||(39755321-39755381)
[»] scaffold0035 (2 HSPs)
scaffold0035 (359-429)||(80085-80155)
scaffold0035 (359-427)||(84136-84204)
[»] chr3 (9 HSPs)
chr3 (359-429)||(37982274-37982344)
chr3 (360-429)||(3808909-3808978)
chr3 (359-429)||(37974856-37974926)
chr3 (359-429)||(44174729-44174799)
chr3 (359-429)||(44181429-44181499)
chr3 (360-429)||(44185380-44185449)
chr3 (359-429)||(3805237-3805307)
chr3 (359-427)||(44174590-44174658)
chr3 (359-427)||(44181290-44181358)
[»] chr2 (6 HSPs)
chr2 (361-429)||(40322002-40322070)
chr2 (362-429)||(40325816-40325883)
chr2 (359-429)||(36216237-36216307)
chr2 (358-429)||(2387273-2387342)
chr2 (393-429)||(2381717-2381753)
chr2 (396-447)||(8264581-8264636)
[»] chr6 (2 HSPs)
chr6 (359-429)||(13848902-13848972)
chr6 (359-429)||(13845036-13845106)
[»] chr4 (10 HSPs)
chr4 (359-429)||(25920225-25920295)
chr4 (359-429)||(51754468-51754538)
chr4 (361-429)||(22158611-22158679)
chr4 (361-429)||(25923159-25923227)
chr4 (358-429)||(50998135-50998206)
chr4 (359-429)||(45698270-45698340)
chr4 (358-429)||(51754699-51754770)
chr4 (359-429)||(23318025-23318095)
chr4 (360-429)||(23314163-23314233)
chr4 (360-429)||(54397547-54397616)
[»] chr1 (3 HSPs)
chr1 (359-429)||(25644564-25644634)
chr1 (358-429)||(8026541-8026612)
chr1 (358-429)||(8272153-8272227)
[»] scaffold1892 (1 HSPs)
scaffold1892 (159-265)||(120-226)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 41882306 - 41882235
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41882306 tccaaaccaatcaaaagttttcatgtatactccattagaataataacatttattattttattttgcaaaaat 41882235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 27261427 - 27261497
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  27261427 ccaaatcaatcaaaatttttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 27261497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 28396487 - 28396417
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  28396487 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 28396417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 31174097 - 31174027
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  31174097 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 31174027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 33938146 - 33938258
Alignment:
Q  136 atgaagaactaactatcaattggataacaatgatgagttttacttctagtaaata---ttcatcgttattttattaattaacaaaaaccaacaatgcatt 232  Q
    ||||||||||||||| |||||||||||||||| ||| |||| |||| ||||| ||   |||| |  ||||||||||||| |||||||||||||||| |||    
T  33938146 atgaagaactaactaacaattggataacaatggtgaattttgcttcaagtaagtactattcagcaatattttattaatttacaaaaaccaacaatgaatt 33938245  T
Q  233 acaaacatgtgaa 245  Q
    |||||||||||||    
T  33938246 acaaacatgtgaa 33938258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 27265685 - 27265616
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  27265685 caaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 27265616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 28392339 - 28392409
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  28392339 ccaaaccaatcaaaattttccatgtgtgctccattagaataataacatttattattttattttgcaaaaat 28392409  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 31170155 - 31170225
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  31170155 ccaaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaaat 31170225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 41873327 - 41873397
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| ||||||| |||||||    
T  41873327 ccaaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttacaaaaat 41873397  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 24089396 - 24089467
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||| |||  ||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  24089396 tccaaaccaattaaatttttccatgtgtactccattagaataatcacatttattattttattttgcaaaaat 24089467  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 24512834 - 24512905
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  24512834 tccaaaccaatcaaaagttttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 24512905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 6334111 - 6334179
Alignment:
Q  361 aaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  6334111 aaaccaatcaaaagttttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 6334179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 1660070 - 1660000
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  1660070 ccaaaccaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 1660000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 12880739 - 12880669
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  12880739 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 12880669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 14033594 - 14033524
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  14033594 ccaaaccaatcaaaagtttttatgtgtactccattagaataataacatttattattttattttgcaaaaat 14033524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 36797721 - 36797792
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  36797721 tccaaaccaatcaaaagtttccatgtgtaccccattagaataataacatttattattttattttgcaaaaat 36797792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 417625 - 417555
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  417625 ccaaactaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 417555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 23712605 - 23712675
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  23712605 ccaaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaaat 23712675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 24517039 - 24516969
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  24517039 ccaaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaaat 24516969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 36804075 - 36804005
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  36804075 ccaaaccaatcaaaaaaattcatgtgtactccattagaataataatatttattattttattttgcaaaaat 36804005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 413432 - 413501
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  413432 caaatcaatcaaaagttttcatgtgtacttcattagaataataacatttattattttattttgcaaaaat 413501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 14029629 - 14029698
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  14029629 caaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaaat 14029698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 37404692 - 37404623
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaa 428  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  37404692 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattatttaattttgcaaaaa 37404623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 1656170 - 1656240
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||| | |||||||||| |||||||||||||||||| |||||||||||||||    
T  1656170 ccaaaccaatcaaaagtttccatatgtactccattaaaataataacatttattattttattttgcaaaaat 1656240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 12876976 - 12877042
Alignment:
Q  363 accaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  12876976 accaatcaaaattttccatgtatactccattagaataataatatttattattttattttgtaaaaat 12877042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 27276860 - 27276805
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattat 413  Q
    |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  27276860 tccaaatcaatcaaaaaatttcatgtgtactccattagaataataacatttattat 27276805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 6338065 - 6337995
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||| | ||||||||||||||||||| ||||||||| |||||||||| ||||    
T  6338065 ccaaaccaatcaaaattttccatttgtactccattagaataataatatttattattttattttgcacaaat 6337995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 31297632 - 31297703
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  31297632 tccaaaccaatcaaaaaatttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 31297703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 31298061 - 31297990
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  31298061 tccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 31297990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 5094165 - 5094235
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  5094165 ccaaatcaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 5094235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 5098407 - 5098337
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| |||  |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  5098407 ccaaaccaatcaaaagtttctatgtgtactccattagaataataacatttattattttattttgcaaaaat 5098337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 24050566 - 24050635
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  24050566 caaatcaatcaaaaaatttcatgtgtactccattagaataataacaattattattttattttgcaaaaat 24050635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 39751447 - 39751517
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| |||||||||| |||||||| ||||||||| |||||||||||||||    
T  39751447 ccaaaccaatcaaaattttccatgtgtactccattaaaataataatatttattattttattttgcaaaaat 39751517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 39755381 - 39755321
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattt 420  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  39755381 caaaccaattaaaagttttcatgtgtactccattagaataataacatttattattttattt 39755321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 80085 - 80155
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  80085 ccaaaccaatcaaaagttttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 80155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 84204 - 84136
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaa 427  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  84204 ccaaaccaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaa 84136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 37982344 - 37982274
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37982344 ccaaaccaatcaaaattttccatgtatactccattagaataataacatttattattttattttgcaaaaat 37982274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 3808978 - 3808909
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  3808978 caaaccaatcaaaaaatttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 3808909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 37974856 - 37974926
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  37974856 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 37974926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 44174729 - 44174799
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  44174729 ccaaaccaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 44174799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 44181429 - 44181499
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  44181429 ccaaaccaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 44181499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 44185449 - 44185380
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  44185449 caaactaatcaaaagttttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 44185380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 3805237 - 3805307
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  3805237 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattatttaattttgcaaaaat 3805307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 44174590 - 44174658
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaa 427  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  44174590 ccaaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaa 44174658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 44181290 - 44181358
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaa 427  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  44181290 ccaaaccaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaa 44181358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 40322002 - 40322070
Alignment:
Q  361 aaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  40322002 aaaccaatcaaaaattttcatgtgtactccattagaataataatatttattattttattttgcaaaaat 40322070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 429
Target Start/End: Complemental strand, 40325883 - 40325816
Alignment:
Q  362 aaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  40325883 aaccaatcaaaagttttcatgtgtactccattagaataataacatttattattttattttgcaaaaat 40325816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 36216307 - 36216237
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| ||||||||| ||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  36216307 ccaaatcaatcaaaatttttcatgtgtactctattagaataataatatttattattttattttgcaaaaat 36216237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 2387342 - 2387273
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||||| ||| ||||| ||||||||  ||||||||| ||||||||| |||||||||||||||    
T  2387342 tccaaaccaatcaaaattttccatgtgtactccat--gaataataatatttattattttattttgcaaaaat 2387273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 2381717 - 2381753
Alignment:
Q  393 tagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2381717 tagaataataacatttattattttattttgcaaaaat 2381753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 8264581 - 8264636
Alignment:
Q  396 aataataacatttattatcttattttgcaaaaat----cacgtattttattattta 447  Q
    |||||||||||||||||| |||||||||||||||    || |||||||||||||||    
T  8264581 aataataacatttattattttattttgcaaaaatttagcatgtattttattattta 8264636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 13848972 - 13848902
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  13848972 ccaaaccaatcaaaattttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 13848902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 13845036 - 13845106
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  13845036 ccaaaccaatcaaaagtttccatgtgtactccattaaaataataacatttattattttattttgcaaaaat 13845106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 25920225 - 25920295
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  25920225 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 25920295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 51754468 - 51754538
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  51754468 ccaaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 51754538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 22158611 - 22158679
Alignment:
Q  361 aaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  22158611 aaaccaatcaaaagtttccatgtgtactccattagaataataacatttattattttattttgcaaaaat 22158679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 25923227 - 25923159
Alignment:
Q  361 aaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  25923227 aaaccaatcaaaaaatttcatgtgtactccattagaataataatatttattattttattttgcaaaaat 25923159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 50998206 - 50998135
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  50998206 tccaaaccaataaaaaatttccatgcgtactccattagaataataacatttattattttattttgcaaaaat 50998135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 45698270 - 45698340
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  45698270 ccaaatcaatcaaaatttttcatgtgtactccattagaataataatatttattattttattttgcaaaaat 45698340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 51754770 - 51754699
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  51754770 tccaaatcaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaaat 51754699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 23318095 - 23318025
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| ||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  23318095 ccaaatcaatcaaaattttccatgtgtactccattagaataataatatttattattttattttgcaaaaat 23318025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 23314163 - 23314233
Alignment:
Q  360 caaaccaatcaaaaa-ttttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  23314163 caaaccaatcaaaaggttttcatgtgtactctattagaataataatatttattattttattttgcaaaaat 23314233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 54397547 - 54397616
Alignment:
Q  360 caaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||| |||||||| ||||||||  |||| |||||||||||||| ||||||||| |||||||||||||||    
T  54397547 caaactaatcaaaagttttcatgcctacttcattagaataataatatttattattttattttgcaaaaat 54397616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 25644564 - 25644634
Alignment:
Q  359 ccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  25644564 ccaaaccaatcaaaagttttcatgtgtacttcattagaataataacatttattattttattttgcaaaaat 25644634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 8026541 - 8026612
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatactccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||| ||||||||||| ||||||||| || |||||||||||||||| ||||||||| |||||||||||||||    
T  8026541 tccacaccaatcaaaatttttcatgtgtattccattagaataataatatttattattttattttgcaaaaat 8026612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 8272153 - 8272227
Alignment:
Q  358 tccaaaccaatcaaaaattttcatgtatact---ccattagaataataacatttattatcttattttgcaaaaat 429  Q
    |||||||||||||||| ||| ||||| ||||   ||||||||||||| | |||||||||||||||||||||||||    
T  8272153 tccaaaccaatcaaaattttccatgtgtactactccattagaataatcatatttattatcttattttgcaaaaat 8272227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1892 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1892
Description:

Target: scaffold1892; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 226 - 120
Alignment:
Q  159 ataacaatgatgagttttacttctagtaaatattcatcgttattttattaattaacaaaaaccaacaatgcattacaaacatgtgaacaaaaagaattaa 258  Q
    ||||||||||||| |||| | || || |||||||||  | |||||||||||||||||||||||  |||||  ||||| |||||||||||||||||||  |    
T  226 ataacaatgatgaattttgcatcaagaaaatattcagtgatattttattaattaacaaaaacccgcaatgagttacatacatgtgaacaaaaagaataga 127  T
Q  259 ttcacat 265  Q
    |||||||    
T  126 ttcacat 120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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