View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_51 (Length: 452)
Name: NF8889_low_51
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 47689087 - 47688752
Alignment:
| Q |
18 |
acatcaccaaaaggcaatacataaaacactaaagaaaacagttaaggtaacctatatatctaatcctatactgttaagggattgccatgcttctgagttc |
117 |
Q |
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| T |
47689087 |
acatcaccaaaaggcaatacataaaacactaaagaaaacagttaaggtaacctatatatctaatcctatactgttaagggattgccatgcttctgagttc |
47688988 |
T |
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| Q |
118 |
agatcattagttcaacacctcacaggtaaaaactccaacaatttcactcatcaaagcattcctctgcatatgcacaatgatcatttggaccacccaccac |
217 |
Q |
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| T |
47688987 |
agatcattagttcaacacctcacaggtaaaaactccaacaatttcactcatcaaagcattcctctgcatatgcacaatgatcatttggaccacccaccac |
47688888 |
T |
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| Q |
218 |
tcgcaattgcagctacatcggctgaagatgtgagcaccacatattacaacagatcaatggatatggattctttcgagttcgatgtagtagattacttttg |
317 |
Q |
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| T |
47688887 |
tcacaattgcagctacatcggctgaagatgtgagcaccacatattacaacagatcaat------ggattctgtcaagttcgatgtaatagattacttttg |
47688794 |
T |
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| Q |
318 |
gaaagaagttgctatttgctttccactgacatatgcaattac |
359 |
Q |
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| T |
47688793 |
gaaagaagttgctatttgctttccactgacatatgcaattac |
47688752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 354 - 434
Target Start/End: Complemental strand, 47688711 - 47688631
Alignment:
| Q |
354 |
aattaccgctactaagttcatttaataatatgatttcattgagtactcaattgtattccttcactcagtatatcattgaat |
434 |
Q |
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| T |
47688711 |
aattaccgctactaagttcatttaataatatgatttcattgagtactcaattgtattccttcactcagtatatcattgaat |
47688631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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