View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_52 (Length: 450)
Name: NF8889_low_52
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 2927858 - 2927681
Alignment:
| Q |
18 |
caatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattataatggaaaatttgtgatggtaacaata |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927858 |
caatattggtcatagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattataatggaaaatttgtgatggtaacaata |
2927759 |
T |
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| Q |
118 |
ttaatgtttggaatgatccttggattcgcagtcattgtttacttccatcatgcttttaaatctaacaaagaacacttg |
195 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2927758 |
ttaatgtttggaatgatccttggattcgtagtcattgtttgcttccatcatgcttttaaatctaacaaagaacacttg |
2927681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 1362225 - 1362357
Alignment:
| Q |
21 |
tattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtgatggtaacaatatt |
119 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| |||||||||| ||||| |
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| T |
1362225 |
tattggtcatagtccaagtttcacgtggaggagtatttggagcactattccaatgttatctcttggttataggtggaaaatcggtgatggtaatgatatt |
1362324 |
T |
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| Q |
120 |
aatgtttggaatgatccttggattcgcagtcat |
152 |
Q |
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| T |
1362325 |
aatgtctggaaagacccatggatccgcactcat |
1362357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 17086245 - 17086131
Alignment:
| Q |
18 |
caatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtgatggtaacaat |
116 |
Q |
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||||||| | || |||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
17086245 |
caatattagccatagtccaagcttcacatggaggaacatttggagcactattcatctcttatcccttggttatagatggaaaatttgtgacggtaacaat |
17086146 |
T |
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| Q |
117 |
attaatgtttggaat |
131 |
Q |
| |
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|| |||||||||||| |
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| T |
17086145 |
atcaatgtttggaat |
17086131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 10533030 - 10532957
Alignment:
| Q |
18 |
caatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata |
91 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||| |
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| T |
10533030 |
caatattggtcgtagtccaagtttcacatggaggagtatctggagcactattccgatgttatttcttgattata |
10532957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 347
Target Start/End: Original strand, 43457360 - 43457492
Alignment:
| Q |
215 |
gtgccaccatctcaatgatgatgcgtggactgttgcttgaacttgggctaaaccgcatgtagaatgaatcaaatgcaacttatattatgctctttttgaa |
314 |
Q |
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|||||||| |||||||| | ||| | |||||||| | |||||||||||||||||| | |||| |||||||||||||| | | ||||||||| ||| |
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| T |
43457360 |
gtgccaccgtctcaatgtttatgtgcagactgttgatcgaacttgggctaaaccgccgacaaaatggatcaaatgcaacttcaactgtgctcttttcgaa |
43457459 |
T |
|
| Q |
315 |
actgaaggtaaatgtggtgtcggtatctgtttt |
347 |
Q |
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||||||||||||| | ||||||||||| |||| |
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| T |
43457460 |
actgaaggtaaattggatgtcggtatctttttt |
43457492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 52843189 - 52843062
Alignment:
| Q |
21 |
tattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtgatggtaacaatatt |
119 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||| ||||||||||| || ||||| |||| || || |||||||| |||||||||| ||||| |
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| T |
52843189 |
tattggtcatagtccaagtttcacgtggaggtgtatttagagcactattctgatgttatctcttggttgtaggtggaaaatcggtgatggtaatgatatt |
52843090 |
T |
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| Q |
120 |
aatgtttggaatgatccttggattcgca |
147 |
Q |
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||||| ||||| || || ||||| |||| |
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| T |
52843089 |
aatgtctggaaagacccatggatccgca |
52843062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 2901668 - 2901781
Alignment:
| Q |
18 |
caatattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtgatggtaacaat |
116 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |||||||||||| || ||||| | | ||||| |||||||| |||||||||| || |
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| T |
2901668 |
caatattggtcatagtacaagtttcacatggaggagtatccagagcactattccgatgttatctatgggttataggtggaaaatcggtgatggtaatgat |
2901767 |
T |
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| Q |
117 |
attaatgtttggaa |
130 |
Q |
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|||||||| ||||| |
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| T |
2901768 |
attaatgtctggaa |
2901781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 32886239 - 32886129
Alignment:
| Q |
21 |
tattggtcagagtccaagtttcacatggaggagtatttggagcactattccaatcttatcccttgattata-atggaaaatttgtgatggtaacaatatt |
119 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||| ||||||||| || ||||| |||| ||||| |||||||| || ||||||| ||||| |
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| T |
32886239 |
tattggtcatagtccaagtttcacatgaaggagtatctggatcactattccgatgttatctcttggttataggtggaaaatcggtaatggtaatgatatt |
32886140 |
T |
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| Q |
120 |
aatgtttggaa |
130 |
Q |
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||||| ||||| |
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| T |
32886139 |
aatgtctggaa |
32886129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 13493632 - 13493784
Alignment:
| Q |
276 |
gaatgaatcaaatgcaacttatattatgctctttttgaaactgaaggtaaatgtggtgtcggtatctgtttttgcgatagtcttgaacatcttgtccaaa |
375 |
Q |
| |
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||||||| |||||||||| | ||| ||||||||||||| || ||||| ||| |||||||||||| |||| || |||| ||||||| ||| ||||| |
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| T |
13493632 |
gaatgaaccaaatgcaacgtggattgtgctctttttgaagctaaaggttaatttggtgtcggtattggtttctgtgataaccttgaacgccttctccaag |
13493731 |
T |
|
| Q |
376 |
cacactccgttatttttccctctgttgcaaccgcatccgaatgtgaagctacc |
428 |
Q |
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| |||||| | | |||| | | ||||||||| | | ||||||||||||||||| |
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| T |
13493732 |
ctcactccatgactttttcatatgttgcaacagtagccgaatgtgaagctacc |
13493784 |
T |
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