View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_55 (Length: 448)

Name: NF8889_low_55
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_55
NF8889_low_55
[»] chr4 (4 HSPs)
chr4 (1-382)||(6029863-6030231)
chr4 (157-232)||(6037686-6037761)
chr4 (399-435)||(6029804-6029840)
chr4 (246-298)||(6030479-6030531)
[»] chr5 (12 HSPs)
chr5 (83-224)||(31475648-31475786)
chr5 (83-232)||(40843022-40843168)
chr5 (83-232)||(31284963-31285109)
chr5 (87-222)||(31279194-31279326)
chr5 (83-222)||(31407131-31407267)
chr5 (83-232)||(31281678-31281824)
chr5 (83-232)||(31505595-31505741)
chr5 (83-222)||(31643589-31643725)
chr5 (144-232)||(31332435-31332523)
chr5 (83-232)||(31317604-31317750)
chr5 (146-232)||(31381222-31381308)
chr5 (83-224)||(31396005-31396143)
[»] chr3 (1 HSPs)
chr3 (145-231)||(25708754-25708840)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 6030231 - 6029863
Alignment:
Q  1 aaacgtttcctataataacatctttgaaggaaaaacattacccaaaaattccaagtatttaaccatcgtagtag-tggaaaacatgcatatagtcttatt 99  Q
    |||||||||||||| |||||||||||||||||||||||| || || ||||||||||||||| ||||||||| || |||||||||||||||||||| | ||    
T  6030231 aaacgtttcctatagtaacatctttgaaggaaaaacatttcctaataattccaagtatttagccatcgtaggagatggaaaacatgcatatagtcctctt 6030132  T
Q  100 tcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactttttactc-ggatgtcta 198  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6030131 tcatgttctacctttcttatcatgtcaatgagtttgtcgacactgcaaactcagtgcggattcgaagtggatcttctttacattttactcaggatgtcta 6030032  T
Q  199 actatgatactcatgaagattaaatttcagttataaacagaaggagttacaaacaacaaacaaactgataacataaaagttgcatttattaggaaccttt 298  Q
    ||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030031 actatgatactcatgaagattaaatttc----------------agttacaaacaacaaacaaactgataacataaaagttgcatttattaggaaccttt 6029948  T
Q  299 aggatcatacgacatattgcacaaatttttgtgacctatatc-actaggagatggagaatatgcatatagtcttatttcagtatt 382  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  6029947 aggatcatatgacatattgcacaaatttttgtgacctatatcaactaggagatggagaacatgcatatagtcttatttcagtatt 6029863  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 6037761 - 6037686
Alignment:
Q  157 ggattcgaagtggatcttctttactttttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    |||||||||||| ||||| |||||||||| ||| ||||||||||| || ||||||||| |||| |||| |||||||    
T  6037761 ggattcgaagtgaatcttttttacttttttctcagatgtctaactgtgttactcatgacgattcaattgcagttat 6037686  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 6029840 - 6029804
Alignment:
Q  399 aactaaataaatcttctcctccaatgctatcatctct 435  Q
    |||||||||||||||||||||||||||||||||||||    
T  6029840 aactaaataaatcttctcctccaatgctatcatctct 6029804  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 6030531 - 6030479
Alignment:
Q  246 tacaaacaacaaacaaactgataacataaaagttgcatttattaggaaccttt 298  Q
    |||||||| |||||| | | ||| |||||||||||||||||||||||||||||    
T  6030531 tacaaacaccaaacagattcataccataaaagttgcatttattaggaaccttt 6030479  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 31475786 - 31475648
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    |||| ||||| || ||||| |||||| |||||  |||||||||| ||||||| || | ||   || ||||||| ||||||||||||||||||||||||||    
T  31475786 atgcttatagcctcatttcttgtgctgcctttgctatcatgtcactgagtttctcgaggc---aatctcagtgtggattcgaagtggatcttctttactt 31475690  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatt 224  Q
    ||| ||||||||||||||| || |||||||||||||||||||    
T  31475689 ttttctcggatgtctaactgtgttactcatgaagattaaatt 31475648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 40843168 - 40843022
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    |||| ||||| || ||||| |||||| |||||  |||||||||| |||||||||| | ||   || |||| || ||||||||||||||||||||||||||    
T  40843168 atgcttatagcctcatttcttgtgctgcctttgctatcatgtcactgagtttgtcgaggc---aatctcattgtggattcgaagtggatcttctttactt 40843072  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    ||| || |||||||||||| || ||||||||||||||||||| |||||||    
T  40843071 ttttcttggatgtctaactgtgttactcatgaagattaaattccagttat 40843022  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 31284963 - 31285109
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    |||||||||| || |||||||||||| |||||  |||||||| |||||||||||| |||  ||||||||| |||||||| ||||| ||| ||||||||||    
T  31284963 atgcatatagcctcatttcatgtgcttccttttctatcatgttaatgagtttgtc-acg--gcaaactcaatgcggatttgaagtcgattttctttactt 31285059  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    ||| ||||||||| ||| | ||  |||||||||||||||||| |||||||    
T  31285060 ttttctcggatgtttaattgtgcaactcatgaagattaaattgcagttat 31285109  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 31279326 - 31279194
Alignment:
Q  87 atatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttacttttta 186  Q
    |||||| || |||||||||||| |||||  |||||||||| | ||||||||   || |||||||||||||||||| ||||| |||||||||||||||||     
T  31279326 atatagcctcatttcatgtgcttcctttgctatcatgtcacttagtttgtc---gcggcaaactcagtgcggatttgaagttgatcttctttactttttt 31279230  T
Q  187 ctcggatgtctaactatgatactcatgaagattaaa 222  Q
    || |||||||||| | |   ||||||||||||||||    
T  31279229 cttggatgtctaattgtacaactcatgaagattaaa 31279194  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 31407267 - 31407131
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    ||||||||||  | |||||||||||  |||||  ||||||||||||||| ||||| |    |||| ||||||| ||| ||||||||||||||||||||||    
T  31407267 atgcatatagcttgatttcatgtgccgcctttgctatcatgtcaatgagcttgtcaa---ggcaatctcagtgtggaatcgaagtggatcttctttactt 31407171  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaa 222  Q
    ||| || |||||||||| ||||  ||||||||||||||||    
T  31407170 tttccttggatgtctaattatgcaactcatgaagattaaa 31407131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 31281678 - 31281824
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    ||||||| ||||| |||||||||||  |||||  |||||||||| | |||||||  | ||   |||||||||||||||||| |||||||||||||||| |    
T  31281678 atgcatacagtctaatttcatgtgccgcctttgctatcatgtcactaagtttgttaaggc---aaactcagtgcggattcgtagtggatcttctttacat 31281774  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    ||| ||||||||| ||| | ||  |||||||||| ||||||| |||||||    
T  31281775 ttttctcggatgtttaattgtgcaactcatgaaggttaaattgcagttat 31281824  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 31505741 - 31505595
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    |||||||||| || |||||| ||||| |||||  |||||||||  | ||||||||   || |||||||||||||||||| || |||||||||||||||||    
T  31505741 atgcatatagcctcatttcaagtgcttcctttgctatcatgtcgctcagtttgtc---gcggcaaactcagtgcggatttgaggtggatcttctttactt 31505645  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    ||| ||||||||| ||| | |   ||| |||||||||||||| |||||||    
T  31505644 ttttctcggatgtttaattgtacaactaatgaagattaaattgcagttat 31505595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 31643725 - 31643589
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    |||||||||| || ||||| |||||| |||||  |||||||||| | |||||||| ||||   ||||| |||||||||| ||| | ||||||||||||||    
T  31643725 atgcatatagcctcatttcttgtgcttcctttgctatcatgtcacttagtttgtcgacgc---aaactgagtgcggatttgaattcgatcttctttactt 31643629  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaa 222  Q
    ||| || |||||||||| | |   ||||||||||||||||    
T  31643628 tttccttggatgtctaattgtccaactcatgaagattaaa 31643589  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 31332435 - 31332523
Alignment:
Q  144 gcaaactcagtgcggattcgaagtggatcttctttactttttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    |||||||||||||||||||||| | ||||||||||| ||||| || ||| | |||| | ||  |||||||||||||||||| |||||||    
T  31332435 gcaaactcagtgcggattcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgcagttat 31332523  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 31317604 - 31317750
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    ||||||||||| | |||||||||||| |||||  ||| |||||| | |||||||| |    |||||||||||| ||||| ||| | ||||||||||| ||    
T  31317604 atgcatatagtttaatttcatgtgctgcctttgctattatgtcacttagtttgtcaa---ggcaaactcagtggggatttgaaattgatcttctttattt 31317700  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    ||| || |||||||||| | |   ||||||||||||||| || |||||||    
T  31317701 tttcctgggatgtctaattgttcaactcatgaagattaagttgcagttat 31317750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 31381222 - 31381308
Alignment:
Q  146 aaactcagtgcggattcgaagtggatcttctttactttttactcggatgtctaactatgatactcatgaagattaaatttcagttat 232  Q
    |||||||||||||||||||| | ||||||||||| ||||| || ||| | |||| | ||  |||||||||||||||||| |||||||    
T  31381222 aaactcagtgcggattcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgcagttat 31381308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 31396005 - 31396143
Alignment:
Q  83 atgcatatagtcttatttcatgtgctacctttcttatcatgtcaatgagtttgtccacgctgcaaactcagtgcggattcgaagtggatcttctttactt 182  Q
    ||||||||||||| |||||||||||| |||||  ||| |||||| | || ||||   ||  ||||| |||||| ||||| |||||||||||| | |||||    
T  31396005 atgcatatagtctaatttcatgtgctgccttttctatgatgtcacttagcttgt---cgaggcaaattcagtgtggatttgaagtggatcttatgtactt 31396101  T
Q  183 tttactcggatgtctaactatgatactcatgaagattaaatt 224  Q
    ||  ||||||||| ||| | |   ||||||||||||||||||    
T  31396102 ttatctcggatgtttaattgtacaactcatgaagattaaatt 31396143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 25708754 - 25708840
Alignment:
Q  145 caaactcagtgcggattcgaagtggatcttctttactttttactcggatgtctaactatgatactcatgaagattaaatttcagtta 231  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| || |||||||||| | ||  |||||||||| | ||||| ||||||    
T  25708754 caaactcagtgtggatttgaagttgatcttctttatttttttcttggatgtctaattgtgcaactcatgaaggtaaaattgcagtta 25708840  T

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