View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_57 (Length: 410)
Name: NF8889_low_57
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 28497560 - 28497176
Alignment:
| Q |
19 |
caactgttagggttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttatgagtgaaataatacatagtctttaatttt |
118 |
Q |
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| T |
28497560 |
caactgttaggattacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttatgagtgaaataatacatagtctttaatttt |
28497461 |
T |
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| Q |
119 |
attggacaaannnnnnngacactacttttttagtcactcc--nnnnnnnnntatcattatgagattgtttagtttgcgtgatgatttgataaccatcctt |
216 |
Q |
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| T |
28497460 |
attggacaaatttttttgacactacttttttagtcactccaaaaaaatatatatcattatgaggttgttcagtttgcgtgatgatttgataaccatcctt |
28497361 |
T |
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| Q |
217 |
taccaaataaccatcaccagagttaagagttcaatctcatttatccacaacataatcttgcnnnnnnnnnnnnnnnctaaaagagaaacacgctagccca |
316 |
Q |
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| T |
28497360 |
tatcaagtaaccatcaccggagttaagagttcaatctcatttatccacaaattaatcttgc-aaaaaaaaaaaaaactaaaagagaaacacgctagccca |
28497262 |
T |
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| Q |
317 |
actgctctccctccgaagcaaaaatacaccttctccaatgccacctttgcccatcta-ccccccaaacttgcatcttcatctctgc |
401 |
Q |
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| T |
28497261 |
actgctctccctccgaagcaaaaatacaccttctccaacgccacctttgcccatctacccccccaaacttgcatcttcatctctgc |
28497176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 168 - 401
Target Start/End: Complemental strand, 28496663 - 28496432
Alignment:
| Q |
168 |
tatcattatgagattgtttagtttgcgtgatgatttgataaccatcctttaccaaataaccatcaccagagttaagagttcaatctcatttatccacaac |
267 |
Q |
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| T |
28496663 |
tatcattatgaggttgctcagtttgtgtgatgattttataaccatcctttaccaagtaaccatcaagagaattaagagtccaaactcatttatccacaac |
28496564 |
T |
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| Q |
268 |
ataatcttgcnnnnnnnnnnnnnnnctaaaagagaaacacgctagcccaactgctctccctccgaagcaaaaatacaccttctccaatgccacctttgcc |
367 |
Q |
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| T |
28496563 |
ataatcttgcaaaaaataaatat--ctaaacgagaaacacgctagcccaactgctctttctccgaagcaaacatacaccttctccaacgacacctttgcc |
28496466 |
T |
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| Q |
368 |
catctaccccccaaacttgcatcttcatctctgc |
401 |
Q |
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| T |
28496465 |
catctaccccccaaacttgcatcctcatctctgc |
28496432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 5476292 - 5476199
Alignment:
| Q |
32 |
tacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgtt-ttatgagtgaaataatacatagtctttaattttattgga |
124 |
Q |
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| T |
5476292 |
tacaaatgaacatgatctaataaaactagttcaaataaaactactaaaactattattttgagtgaaatattacatagtttttaatttcattgga |
5476199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 8323290 - 8323205
Alignment:
| Q |
32 |
tacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttatgagtgaaataatacatagtctttaattt |
117 |
Q |
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| T |
8323290 |
tacaaatgaatatgagctaataaaactaacctcaataaaactattaaaacagcttttcgagtgaaataatacatagtttttaattt |
8323205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 1806269 - 1806357
Alignment:
| Q |
30 |
gttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttatgag-tgaaataatacatagtctttaattt |
117 |
Q |
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| T |
1806269 |
gttacaaatgaacttgaactaataaaattagaccaaacaaaactactacaactgttattttaggtgaaatagtacacagtctttaattt |
1806357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 47377616 - 47377713
Alignment:
| Q |
23 |
tgttagggttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgtt-ttatgagtgaaataatacatagtctttaattttatt |
121 |
Q |
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| T |
47377616 |
tgttagggttataaatagacatgagctaataaaacttgcccaaataaaactacta-aactgttattttgaatgaaataat--atcgtctttaatttaatt |
47377712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 42059984 - 42059954
Alignment:
| Q |
91 |
agtgaaataatacatagtctttaattttatt |
121 |
Q |
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| T |
42059984 |
agtgaaataatacatagtctttaattttatt |
42059954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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