View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_62 (Length: 409)
Name: NF8889_low_62
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_62 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 47874808 - 47874426
Alignment:
| Q |
18 |
agtatcaatctaagaagaaagggatttttgctgaacttatcaatttccagaattcaaaatgtcaaagaagtggggaattaaactgaaaatccagaaaacg |
117 |
Q |
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| T |
47874808 |
agtatcaatctaagaagaaagggatttttgctgaacttatcaatttccagaattcaaaatgtcaaagaagtggg-aattaaactgaaaatccagaaaatg |
47874710 |
T |
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| Q |
118 |
agccctgttgttgaatctaattttggaattttgctcatgatttcctcaacgtcgaagaagtgggaaaaacttctggataggtatcctatatcagaactga |
217 |
Q |
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| T |
47874709 |
agccctgttgttgaatctaattttggaattttgctcatgatttcctcaacgtcgaagaagtgggaaaaacttctggataggtatcctatatcataactga |
47874610 |
T |
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| Q |
218 |
atcctttcggggttaaaggatatgtttctcgttaaactgaaaattaaaggggctagacgacgctagacaacccttgtagtcatatcgtcagacaccgtgg |
317 |
Q |
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| T |
47874609 |
attctttcggg-ttaaaggataa-tttctcgttaaactgaaaattaaaggggctagacaacgctagacaacccttgtagtcatatcgtcagacaccacgg |
47874512 |
T |
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| Q |
318 |
tcgtacatcgtccccctctgacccaaggatcagtgtcctcttcaaaaacacaaccacttcgttcaaacaatttccagcaacaccat |
403 |
Q |
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| T |
47874511 |
tcgtacaacgcccccctctgacccaaggatcagtgtcctcttcaacaacacaaccacttcattcaaacaatttccagcaagaccat |
47874426 |
T |
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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 7999261 - 7999192
Alignment:
| Q |
180 |
ggaaaaacttctggataggtatcctatatcagaactgaatcctttcggggttaaaggatatgtttctcgtt |
250 |
Q |
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| T |
7999261 |
ggaaaaacttctggataggtatcctatatcagaactgaattctttc-gggttaaaggatatgtttctcgtt |
7999192 |
T |
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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 9230822 - 9230753
Alignment:
| Q |
180 |
ggaaaaacttctggataggtatcctatatcagaactgaatcctttcggggttaaaggatatgtttctcgtt |
250 |
Q |
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| T |
9230822 |
ggaaaaacttctggataggtatcctatatcagaactgaattcttt-tgggttaaaggatatgtttctcgtt |
9230753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 18351766 - 18351835
Alignment:
| Q |
180 |
ggaaaaacttctggataggtatcctatatcagaactgaatcctttcggggttaaaggatatgtttctcgtt |
250 |
Q |
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| T |
18351766 |
ggaaaaacttctggataggtatcctatatcagaactgaattcttt-tgggttaaaggatatgtttctcgtt |
18351835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 2915190 - 2915259
Alignment:
| Q |
180 |
ggaaaaacttctggataggtatcctatatcagaactgaatcctttcggggttaaaggatatgtttctcgtt |
250 |
Q |
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| T |
2915190 |
ggaaaaacttctagatagatatcctatatcagaactgaattcttt-tgggttaaaggatatgtttctcgtt |
2915259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 2181 - 2223
Alignment:
| Q |
183 |
aaaacttctggataggtatcctatatcagaactgaatcctttc |
225 |
Q |
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| T |
2181 |
aaaacttctggataggtatcctacatctgaactgaattctttc |
2223 |
T |
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