View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8889_low_64 (Length: 404)

Name: NF8889_low_64
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8889_low_64
NF8889_low_64
[»] chr1 (11 HSPs)
chr1 (186-401)||(26454346-26454561)
chr1 (19-186)||(26454105-26454272)
chr1 (258-401)||(26446240-26446386)
chr1 (303-401)||(26449129-26449227)
chr1 (105-185)||(26445968-26446048)
chr1 (186-250)||(26449431-26449495)
chr1 (186-260)||(26446122-26446196)
chr1 (25-60)||(26445977-26446012)
chr1 (107-144)||(26445897-26445934)
chr1 (19-69)||(26445853-26445907)
chr1 (25-69)||(26445904-26445948)
[»] chr8 (2 HSPs)
chr8 (309-394)||(29673360-29673445)
chr8 (142-186)||(29673165-29673209)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 186 - 401
Target Start/End: Original strand, 26454346 - 26454561
Alignment:
Q  186 taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaacctgggcgttcttcaatatatttaagatcagatcg 285  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454346 taaccaataactaaacaggcaaaggtatgatctttttcaatttcactttcgacaattttctttaacctgggcgttcttcaatatatttaagatcagatcg 26454445  T
Q  286 atcgaagtggttttgagtcagtgttgtgtatgatccatgttggtgtacattcgatcgcttatattttcttaaattattagggttttctacgagttagtgt 385  Q
    ||||||||||||||| ||||||| | ||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  26454446 atcgaagtggttttgtgtcagtgctatgtctgatccatgttggtgtatatttgatcgcttatattttcttaaattattagggttttctacgagttagtct 26454545  T
Q  386 cgtgtctgatgtccat 401  Q
    ||||||||| ||||||    
T  26454546 cgtgtctgaagtccat 26454561  T

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Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26454105 - 26454272
Alignment:
Q  19 ttttaccaataaatagtgtgcaagttgcatgttttaccaaaatcactcaatgtgcaagttgtatgttttaaaatagtggtccctacagaatcactcaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26454105 ttttaccaataaatagtgtgcaagttgcatgttttaccaaaatcactcaatgtgcaagttgtatgttttaaaatagtggtccctacagaatcactcaata 26454204  T
Q  119 aatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttgtcct 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26454205 aatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttatcct 26454272  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 258 - 401
Target Start/End: Original strand, 26446240 - 26446386
Alignment:
Q  258 gttcttcaatatatttaagatcagatcgatcgaagtggttt-tgagtcagtgttgtgtatgatccatgttggtgtacattcgatcgcttatattttctta 356  Q
    |||||| ||||||||||||||||||||||| |||||||| | ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  26446240 gttctttaatatatttaagatcagatcgattgaagtggtgtctgaatcaatgttgtgtctgatccatgttggtgtacatttgatcgcttatattttctta 26446339  T
Q  357 aattattagggttttctacgagt--tagtgtcgtgtctgatgtccat 401  Q
    ||||||||||||||||||||| |  |||||| |||||||| ||||||    
T  26446340 aattattagggttttctacgatttatagtgttgtgtctgaagtccat 26446386  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 26449227 - 26449129
Alignment:
Q  303 tcagtgttgtgtatgatccatgttggtgtacattcgatcgcttatattttcttaaattattagggttttctacgagttagtgtcgtgtctgatgtccat 401  Q
    |||||||||| | | ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  26449227 tcagtgttgtatctaatccatgttggtgtacattagatctcttatattttcttaaattattagggttgtctatgagttagtgttgtgtctgacgtccat 26449129  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 26445968 - 26446048
Alignment:
Q  105 agaatcactcaataaatagtgtgtaagttgtatgttttaccaaaaccgaatacctagccgtgttgttttgtttctttgtcc 185  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || || | ||||||||||||||||    
T  26445968 agaatcactcaataaatagtgtgcaagttgtatgttttaccaaaacctaatacctaaccatgctattttgtttctttgtcc 26446048  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 26449495 - 26449431
Alignment:
Q  186 taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaa 250  Q
    |||||||||||||||||| |||| | ||||||||||||| |||||| ||||||||||||||||||    
T  26449495 taaccaataactcaacagacaaatgcatgatctttttcattttcactttcgacaattttctttaa 26449431  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 26446122 - 26446196
Alignment:
Q  186 taaccaataactcaacaggcaaaggtatgatctttttcaatttcacattcgacaattttctttaacctgggcgtt 260  Q
    |||||||  ||||||| | ||||||||||||| ||||||||||||| |||||||||||| ||||| |||| ||||    
T  26446122 taaccaaccactcaactgacaaaggtatgatccttttcaatttcactttcgacaattttatttaatctggccgtt 26446196  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 26445977 - 26446012
Alignment:
Q  25 caataaatagtgtgcaagttgcatgttttaccaaaa 60  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26445977 caataaatagtgtgcaagttgtatgttttaccaaaa 26446012  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 26445897 - 26445934
Alignment:
Q  107 aatcactcaataaatagtgtgtaagttgtatgttttac 144  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  26445897 aatcactcaatcaatagtgtgcaagttgtatgttttac 26445934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 26445853 - 26445907
Alignment:
Q  19 ttttaccaataaat---agtgtgcaagttgcatgtttt-accaaaatcactcaat 69  Q
    ||||||||||||||   |||||||| |||||||||||| ||||||||||||||||    
T  26445853 ttttaccaataaattagagtgtgcaggttgcatgtttttaccaaaatcactcaat 26445907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26445904 - 26445948
Alignment:
Q  25 caataaatagtgtgcaagttgcatgttttaccaaaatcactcaat 69  Q
    |||| |||||||||||||||| ||||||||| | |||||||||||    
T  26445904 caatcaatagtgtgcaagttgtatgttttacaagaatcactcaat 26445948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 29673360 - 29673445
Alignment:
Q  309 ttgtgtatgatccatgttggtgtacattcgatcgcttatattttcttaaattattagggttttctacgagttagtgtcgtgtctga 394  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  29673360 ttgtgtctgatacatgttggtgtacatttgatcgcttatattttcttaaattattagggttgtctacgagttagtgttgtgtctga 29673445  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 29673165 - 29673209
Alignment:
Q  142 taccaaaaccgaatacctagccgtgttgttttgtttctttgtcct 186  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||    
T  29673165 taccaaaacctaattcctagtcgtgttgttttgtttctttgtcct 29673209  T

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