View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_68 (Length: 382)
Name: NF8889_low_68
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 36097675 - 36097302
Alignment:
| Q |
1 |
ccaacattcaaataacttacttgttgt------cttttgttcttttgatgttccttaatttgagcttatgtttcttttcaaagaataaacgtagcctcga |
94 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36097675 |
ccaacattcaaataacttacttgttgtaaacgtcttttgttcttttgatgttccttaatttgagcttatgtttcttttcaaagaataaacgtagcctcga |
36097576 |
T |
|
| Q |
95 |
tcatttgttccacacatttaaaaattccatctttaaattaaaactcggcttcttcctagaagcaaagtcctttcattgataatccctttgaaccttctat |
194 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36097575 |
tcatttgttccacacatttaaaaattccatctttaaattaaaactcggcttcttcctagaagcaaagtcctttcattgataatccctttgaaccttctat |
36097476 |
T |
|
| Q |
195 |
tatatacagctaataatccctaaaccactttactatgtttgtccccttttatttttgcgagtagatgccaaacaatgcaatcaaatgatannnnnnncta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36097475 |
tatatacagctaataatccctaaaccactttactatgtttgtccccttttatttttgcgagtagatgccaaacaatgcaatcaaatgatatttttttcta |
36097376 |
T |
|
| Q |
295 |
tttttatttcatcccatctaataatggtaatgaagccatgccttcaatgtttggaagaaggggaacaatgttat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36097375 |
tttttatttcatcccatctaataatggtaatgaagccatgccttcaatgtttggaagaaggggaacaatgttat |
36097302 |
T |
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