View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_70 (Length: 377)
Name: NF8889_low_70
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 44886591 - 44886293
Alignment:
| Q |
16 |
tggggcggaggttatagaaaatggatgcctgtgaaaccataaacattactatttaacaaaatgctcgcgttcgattacaatatattttcaaattcataga |
115 |
Q |
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| T |
44886591 |
tggggcggaggttatagaaaatggatgcctgtgaaaccataaacattactatttaacaaaatgctcgtgttcgattataatatattttcaaattcataga |
44886492 |
T |
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| Q |
116 |
cagacagtacgtaccattcaaatggagagacattagcacattttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacacgaag |
215 |
Q |
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| T |
44886491 |
cagacagtacttaccattcaaatggagagacattagcacattttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacacgaag |
44886392 |
T |
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| Q |
216 |
ccccaacacgtctccacgagaattgagatcctttttataaacaaccgccttcaagtcggacatacaaaatatggtcagaatttcaggtccatgtacaat |
314 |
Q |
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| T |
44886391 |
ccccaacacgtctccacgagaattgagatcctttttataaacaaccgccttcaagtcggacatacaaaatatggtcagaatttcaggtccatgtacaat |
44886293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 44899926 - 44899837
Alignment:
| Q |
126 |
gtaccattcaaatggagagacattagcacattttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacacgaag |
215 |
Q |
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| T |
44899926 |
gtaccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacatgaag |
44899837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 44900049 - 44899962
Alignment:
| Q |
16 |
tggggcggaggttatagaaaatggatgcctgtgaaaccataaacattactatttaacaaaatgctc-gcgttcgattacaatatattt |
102 |
Q |
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| T |
44900049 |
tggggcggaggttatagaaaatggatgcctgtgaaagcataaacaatagtatttaacaaaatgctcggggttcgattataatatattt |
44899962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 44916149 - 44916067
Alignment:
| Q |
126 |
gtaccattcaaatggagagacattagcacattttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgaca |
208 |
Q |
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| T |
44916149 |
gtaccattcaaatggagagacagcagcacaatttacaaacatgtattgtccactcttgtatctaaacccctgaggctttgaca |
44916067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 41557624 - 41557566
Alignment:
| Q |
127 |
taccattcaaatggagagacattagcacattttacaaacatgtattgtccgctcttgta |
185 |
Q |
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| T |
41557624 |
taccactcaaacggagagacagcagcacattgtacaaacatgtattgtccgcttttgta |
41557566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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