View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_75 (Length: 341)
Name: NF8889_low_75
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 25741892 - 25742217
Alignment:
| Q |
1 |
aactcaacattttcactatgatacacccttttaggtttgagaaaagacttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggaggc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741892 |
aactgaacattttcactatgatacacccttttaggtttgagaaaagacttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggaggc |
25741991 |
T |
|
| Q |
101 |
cgcagaagaagctccggccaccggatatggactgaaatgaaacgttggggagtattggtggaatgagttttttgttttggtagcattggatgtattggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741992 |
cgcagaagaagctccggccaccggatatggactgaaatgaaacgttggggagtattggtggaatgagttttttgttttggtagcattggatgtattggta |
25742091 |
T |
|
| Q |
201 |
gggcttaccggcgactatgccgcagatggtggaggtgttgtggatgatggcggtagtggtggcggtgccgaggctgttgacggtggttatggtgaaaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25742092 |
gggcttaccggcgactatgccgcagatggtggaggtgttgtggatgatggcggtagtggtggcggtgccgaggctgttgacggtggttatggtgaaaatg |
25742191 |
T |
|
| Q |
301 |
aaggagaaaatgagtgttagtgatgt |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
25742192 |
aaggagaaaatgagtgttagtgatgt |
25742217 |
T |
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