View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8889_low_77 (Length: 340)
Name: NF8889_low_77
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 62 - 325
Target Start/End: Original strand, 5601581 - 5601850
Alignment:
| Q |
62 |
ttggtatgaataaagccaatgcatactatttagattacggctcatcttctggctgaatctatgtattgtgtttgtcttgaaaattcaagagttatagttt |
161 |
Q |
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| T |
5601581 |
ttggtatgaataaagccaatgcatactatttggattacggctcatcttctggctgaatctatgtattgtgtttgtcttgaaaattcaagagttatagttt |
5601680 |
T |
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| Q |
162 |
attatatattgataaaattttcattattttgtactccaagttgtaagaagattggttgga---nnnnnnnnnngctttggcacgatcgttcgc---aatc |
255 |
Q |
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| T |
5601681 |
attatatattgataaaattttcattattttgtactccaagttgtaagaagattggttggattttttttttctttctttggtatgatcgttcgcattaatc |
5601780 |
T |
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| Q |
256 |
cacccattcgcatacagatattatggatccgaatcctatctcacaatatagttgtatgatagtgtttttt |
325 |
Q |
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| T |
5601781 |
cacccattcgcatacagatattatggatccgaatcctatctcacaatatagttgtatgatagtgtttttt |
5601850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5601513 - 5601558
Alignment:
| Q |
15 |
atactaaatgctatttatcccatttcttatcactttcatgacccta |
60 |
Q |
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| T |
5601513 |
atactaaatgctatttatcccatttcttatcactttcatgacccta |
5601558 |
T |
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