View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8889_low_79 (Length: 331)
Name: NF8889_low_79
Description: NF8889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8889_low_79 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 5347301 - 5347606
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaagagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5347301 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
5347400 |
T |
|
| Q |
111 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
5347401 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagttaacctttgaatgacatccaactttattgta |
5347500 |
T |
|
| Q |
211 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5347501 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattatctgacaaatcta |
5347600 |
T |
|
| Q |
311 |
acatct |
316 |
Q |
| |
|
|||||| |
|
|
| T |
5347601 |
acatct |
5347606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 5378106 - 5377801
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaagagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5378106 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaaaagcttacaagattccaaatctagaactctcaactttggaaaggatgacatgtt |
5378007 |
T |
|
| Q |
111 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgta |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||| || |
|
|
| T |
5378006 |
atgatcatctttgaagttgacatcaatcaaaagattgttatatgatagccctaatacagttaaattacttaaccttctaatgacatccaactttactgtc |
5377907 |
T |
|
| Q |
211 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5377906 |
ccattaaacttgttgtaagaaagttgaatgaaacgaagtgttcggaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
5377807 |
T |
|
| Q |
311 |
acatct |
316 |
Q |
| |
|
||||| |
|
|
| T |
5377806 |
tcatct |
5377801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 5424621 - 5424926
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaagagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
5424621 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaattctcatctttggaaaggatgacatgtt |
5424720 |
T |
|
| Q |
111 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgta |
210 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || || || |||||| |||||||||| ||| |
|
|
| T |
5424721 |
atgatcatatttgaagttgacatcaaccaaaagattgttatatgatagccctaatacagttaaattacttaactttctaatgacgtccaactttactgta |
5424820 |
T |
|
| Q |
211 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5424821 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgtttgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
5424920 |
T |
|
| Q |
311 |
acatct |
316 |
Q |
| |
|
||||| |
|
|
| T |
5424921 |
tcatct |
5424926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 5400781 - 5400482
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaagagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
110 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||| |||||| ||||| | || | |||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
5400781 |
tagataatattgtggactggtttctcaagaaactaggaaattgtaacagcttgtaggaatccaaacctggacctctcaactttggaaaggatgacatgtt |
5400682 |
T |
|
| Q |
111 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgta |
210 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || ||||| |||| ||||||||||||||||| |
|
|
| T |
5400681 |
atgatcatcttcgaagttgacatcaatgaaaagattgttatatgatagccctaagatagttaaattacttaaccttctaatggcatccaactttatcgta |
5400582 |
T |
|
| Q |
211 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5400581 |
ccattaaacttgttgaaagaaagttgaatgaaacgaagtgttggaaggttaaagatagataatgggatagggccttgtaaataattattggacaaatcta |
5400482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 5353749 - 5353463
Alignment:
| Q |
22 |
gtggattggtttttcaagaaactaggaatttgtaagagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgttatgatcatgtt |
121 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| | ||||| ||||| | ||| ||||| ||||| ||| |||||| ||| || ||||||| ||| |
|
|
| T |
5353749 |
gtggactggtttctcaagaaactagggatttctctcagcttgcaagaatccaacattagaattctcatcttaggaaagggcaacaagtcatgatcaagtt |
5353650 |
T |
|
| Q |
122 |
tgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgtaccattaaactt |
221 |
Q |
| |
|
||| ||||||||||| |||| ||||||| ||| ||||||| |||||||||||| || ||||| ||||| |||||| | |||||| ||||||||||| |
|
|
| T |
5353649 |
tgatgttgacatcaacataaaggttgttatgtgagagccctagtatagttaaatttcttaaccttctaatgatatccaagtatatcgtgccattaaactt |
5353550 |
T |
|
| Q |
222 |
gttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatc |
308 |
Q |
| |
|
|||| | |||||||||||||||||||||||| || |||||||| ||| || |||||||| ||||| |||| |||| ||| |||||| |
|
|
| T |
5353549 |
gttgtacgaaagttgaatgaaacgaagtgttttaatgttaaagacagacaaaggaataggtccttgcaaattattactggtcaaatc |
5353463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 5411761 - 5411593
Alignment:
| Q |
122 |
tgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgtaccattaaactt |
221 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||| |||| || | ||||||| | |||||||| ||||| ||||| ||| || || |||||||| |
|
|
| T |
5411761 |
tgaagttgacatcaattgacagattgttatgtgataagcctagtacatttaaattccgtagcctttgaaggacattcaactgtattgtgccgttaaactt |
5411662 |
T |
|
| Q |
222 |
gttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaa |
290 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| ||| || |||| | | |||||||| |
|
|
| T |
5411661 |
gttggaagaaagttgaaagacacgaagtgttcgaaggttaaagagagagaaaggaacatgtccttgtaa |
5411593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 308
Target Start/End: Complemental strand, 5362584 - 5362419
Alignment:
| Q |
144 |
attgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaa-ctttatcgtaccattaaacttgttggaagaaagttgaatgaa |
242 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||| || |||||||||||| ||||| || ||| || ||||||||||||||||| ||||||| |||| |
|
|
| T |
5362584 |
attgttatgtgatagccttagtataattaaattacttagcctttgaatgacgtccaaactgtattgtgccattaaacttgttggatgaaagttcaatgcc |
5362485 |
T |
|
| Q |
243 |
acgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatc |
308 |
Q |
| |
|
|| |||||||| ||||||||||| ||| || ||||| || ||||| | || |||||| | |||||| |
|
|
| T |
5362484 |
acaaagtgttctaaggttaaagacagacaaaggaattggaccttgcagattattatttgtcaaatc |
5362419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 5501513 - 5501368
Alignment:
| Q |
124 |
aagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgtaccattaaacttgt |
223 |
Q |
| |
|
||||||||||| || | | |||||| | ||| || |||| ||||||||||||| || |||| |||||| ||||||| ||| | || |||||||||| |
|
|
| T |
5501513 |
aagttgacatccattgacaaattgttgtgtgagaggcctagtatagttaaattacttagccttcgaatgatgtccaactgtattgcgccgttaaacttgt |
5501414 |
T |
|
| Q |
224 |
tggaagaaagttgaatgaaacgaagtgttcgaaggttaaagataga |
269 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
5501413 |
tggaagaaagttgaatgacacggagtgttctaaggttaaagataga |
5501368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 5469087 - 5469194
Alignment:
| Q |
183 |
cctttgaatgacatccaactttatcgtaccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaataggg |
282 |
Q |
| |
|
|||||||||||||| | | | ||| || || |||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||||| || |||| | | |
|
|
| T |
5469087 |
cctttgaatgacattccattgtattgtgccgttaaacttgttgaaagaaagttgaatgacacgaagtgttctaagtttaaagatagagaaaggaacatgt |
5469186 |
T |
|
| Q |
283 |
ccttgtaa |
290 |
Q |
| |
|
|||||||| |
|
|
| T |
5469187 |
ccttgtaa |
5469194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 5392323 - 5392155
Alignment:
| Q |
111 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgta |
210 |
Q |
| |
|
|||||||| | |||||||||||||||| | | | ||||| ||| || |||| || |||||||||| | |||| |||||| ||||| | ||| || |
|
|
| T |
5392323 |
atgatcatctctgaagttgacatcaattgacaaaaagttatttgagaggcctagtacagttaaattactcagccttcgaatgatgtccaattgtattgtg |
5392224 |
T |
|
| Q |
211 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaata |
279 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||||||| ||| ||||||||||| ||| | ||||||| |
|
|
| T |
5392223 |
ccattcaacttattggaagaaagttgaaggacacgaagttttctaaggttaaagacagagactggaata |
5392155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 20328281 - 20327976
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaagagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
20328281 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaattctcatctttggaaaggatgacatgtt |
20328182 |
T |
|
| Q |
111 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagtttacctttgaatgacatccaactttatcgta |
210 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||| ||| |
|
|
| T |
20328181 |
atgatcatatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaatgacatccaactttactgta |
20328082 |
T |
|
| Q |
211 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgttcgaaggttaaagatagataatggaatagggccttgtaaataattattggacaaatcta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20328081 |
ccattaaacttgttggaagaaagttgaatgaaacgaagtgtttgaaggttaaagatagataatggaatagggccttctaaataattattggacaaatcta |
20327982 |
T |
|
| Q |
311 |
acatct |
316 |
Q |
| |
|
||||| |
|
|
| T |
20327981 |
tcatct |
20327976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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